Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF520 and GFF521 overlap by 4 nucleotides GFF521 and GFF522 are separated by 20 nucleotides
GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868
GFF520
GFF521 - Secretion protein HlyD precursor, at 560,865 to 562,001
GFF521
GFF522 - RND efflux system, inner membrane transporter, at 562,022 to 565,138
GFF522
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -1
0
1
2 at 559.918 kb on + strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 560.260 kb on + strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.366 kb on - strand, within GFF520 at 560.485 kb on + strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.506 kb on + strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.644 kb on + strand, within GFF520 at 560.645 kb on - strand, within GFF520 at 560.761 kb on + strand at 561.163 kb on + strand, within GFF521 at 561.163 kb on + strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.324 kb on + strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.999 kb on + strand at 561.999 kb on + strand at 562.000 kb on - strand at 562.000 kb on - strand at 562.044 kb on + strand at 562.044 kb on + strand at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.803 kb on + strand, within GFF522
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 559,918 + GFF520 0.38 +0.2 559,918 + GFF520 0.38 +0.1 560,260 + GFF520 0.60 -1.5 560,261 - GFF520 0.60 -0.7 560,261 - GFF520 0.60 -0.8 560,261 - GFF520 0.60 +0.4 560,261 - GFF520 0.60 -0.6 560,261 - GFF520 0.60 +0.8 560,366 - GFF520 0.67 -0.2 560,485 + GFF520 0.75 +0.1 560,486 - GFF520 0.75 -0.2 560,486 - GFF520 0.75 +0.4 560,506 + GFF520 0.76 -0.6 560,507 - GFF520 0.76 -1.3 560,507 - GFF520 0.76 -0.4 560,507 - GFF520 0.76 +0.2 560,611 + GFF520 0.83 +0.1 560,611 + GFF520 0.83 +0.1 560,612 - GFF520 0.83 +0.0 560,612 - GFF520 0.83 +0.6 560,612 - GFF520 0.83 +0.7 560,612 - GFF520 0.83 -0.2 560,644 + GFF520 0.85 +0.1 560,645 - GFF520 0.85 +0.8 560,761 + +0.4 561,163 + GFF521 0.26 -0.3 561,163 + GFF521 0.26 -0.4 561,164 - GFF521 0.26 -0.8 561,164 - GFF521 0.26 -0.2 561,164 - GFF521 0.26 -0.1 561,324 + GFF521 0.40 +0.5 561,325 - GFF521 0.40 +0.8 561,325 - GFF521 0.40 -1.5 561,669 + GFF521 0.71 -0.1 561,669 + GFF521 0.71 -0.5 561,669 + GFF521 0.71 -0.6 561,669 + GFF521 0.71 -1.1 561,669 + GFF521 0.71 +1.4 561,669 + GFF521 0.71 -0.1 561,670 - GFF521 0.71 +0.4 561,670 - GFF521 0.71 -0.8 561,670 - GFF521 0.71 +1.8 561,670 - GFF521 0.71 +0.3 561,670 - GFF521 0.71 -0.2 561,670 - GFF521 0.71 -0.6 561,670 - GFF521 0.71 -1.6 561,999 + +0.0 561,999 + +0.2 562,000 - -0.5 562,000 - -1.2 562,044 + +0.3 562,044 + -0.0 562,487 + GFF522 0.15 +0.4 562,487 + GFF522 0.15 -1.6 562,487 + GFF522 0.15 -0.0 562,487 + GFF522 0.15 -0.0 562,487 + GFF522 0.15 +0.5 562,488 - GFF522 0.15 +0.8 562,488 - GFF522 0.15 -0.2 562,488 - GFF522 0.15 -0.6 562,488 - GFF522 0.15 +0.0 562,803 + GFF522 0.25 -0.6
Or see this region's nucleotide sequence