Strain Fitness in Variovorax sp. SCN45 around GFF5035

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5033 and GFF5034 are separated by 3 nucleotidesGFF5034 and GFF5035 overlap by 4 nucleotidesGFF5035 and GFF5036 overlap by 4 nucleotides GFF5033 - ABC-type spermidine/putrescine transport system, permease component II, at 133,805 to 134,599 GFF5033 GFF5034 - Opine oxidase subunit C, at 134,603 to 134,908 GFF5034 GFF5035 - Opine oxidase subunit A, at 134,905 to 136,302 GFF5035 GFF5036 - Opine oxidase subunit B, at 136,299 to 137,462 GFF5036 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.235 kb on - strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.564 kb on + strandat 134.564 kb on + strandat 134.564 kb on + strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.597 kb on + strandat 134.597 kb on + strandat 134.597 kb on + strandat 134.598 kb on - strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.035 kb on - strandat 135.035 kb on - strandat 135.082 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.313 kb on + strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.758 kb on + strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.817 kb on + strand, within GFF5035at 135.818 kb on - strand, within GFF5035at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.558 kb on - strand, within GFF5036at 136.621 kb on - strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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134,234 + GFF5033 0.54 -0.2
134,234 + GFF5033 0.54 -0.5
134,234 + GFF5033 0.54 -0.7
134,234 + GFF5033 0.54 -0.1
134,235 - GFF5033 0.54 -0.5
134,465 + GFF5033 0.83 +0.8
134,465 + GFF5033 0.83 +0.3
134,465 + GFF5033 0.83 +0.1
134,465 + GFF5033 0.83 +0.2
134,465 + GFF5033 0.83 +0.3
134,465 + GFF5033 0.83 -0.0
134,465 + GFF5033 0.83 +0.1
134,465 + GFF5033 0.83 +0.2
134,465 + GFF5033 0.83 +0.6
134,465 + GFF5033 0.83 +0.3
134,465 + GFF5033 0.83 -0.5
134,465 + GFF5033 0.83 -0.6
134,465 + GFF5033 0.83 +0.2
134,465 + GFF5033 0.83 -2.7
134,465 + GFF5033 0.83 +0.1
134,465 + GFF5033 0.83 -0.7
134,465 + GFF5033 0.83 -1.1
134,465 + GFF5033 0.83 -0.6
134,465 + GFF5033 0.83 -0.6
134,465 + GFF5033 0.83 -0.4
134,465 + GFF5033 0.83 +0.6
134,465 + GFF5033 0.83 -1.1
134,465 + GFF5033 0.83 +0.3
134,465 + GFF5033 0.83 +0.5
134,465 + GFF5033 0.83 -0.3
134,465 + GFF5033 0.83 +0.5
134,465 + GFF5033 0.83 -0.4
134,465 + GFF5033 0.83 -0.7
134,465 + GFF5033 0.83 -0.2
134,465 + GFF5033 0.83 -0.1
134,465 + GFF5033 0.83 +1.2
134,466 - GFF5033 0.83 -0.3
134,466 - GFF5033 0.83 -1.0
134,466 - GFF5033 0.83 +0.0
134,466 - GFF5033 0.83 +0.3
134,466 - GFF5033 0.83 -0.7
134,466 - GFF5033 0.83 +0.6
134,466 - GFF5033 0.83 -0.5
134,466 - GFF5033 0.83 -0.0
134,466 - GFF5033 0.83 +1.8
134,466 - GFF5033 0.83 -0.3
134,466 - GFF5033 0.83 +1.4
134,466 - GFF5033 0.83 -1.4
134,466 - GFF5033 0.83 +0.2
134,466 - GFF5033 0.83 -0.2
134,466 - GFF5033 0.83 -1.5
134,466 - GFF5033 0.83 +0.4
134,466 - GFF5033 0.83 -0.5
134,466 - GFF5033 0.83 +0.5
134,466 - GFF5033 0.83 +0.8
134,466 - GFF5033 0.83 -0.3
134,466 - GFF5033 0.83 -0.5
134,466 - GFF5033 0.83 -0.7
134,466 - GFF5033 0.83 -0.7
134,466 - GFF5033 0.83 +0.2
134,471 + GFF5033 0.84 +1.2
134,471 + GFF5033 0.84 -1.1
134,471 + GFF5033 0.84 +0.1
134,471 + GFF5033 0.84 +1.4
134,471 + GFF5033 0.84 -0.6
134,471 + GFF5033 0.84 -0.9
134,471 + GFF5033 0.84 -0.7
134,471 + GFF5033 0.84 +0.0
134,471 + GFF5033 0.84 +0.4
134,471 + GFF5033 0.84 +0.2
134,472 - GFF5033 0.84 +0.8
134,472 - GFF5033 0.84 +0.8
134,472 - GFF5033 0.84 +0.2
134,472 - GFF5033 0.84 -0.5
134,472 - GFF5033 0.84 -0.1
134,472 - GFF5033 0.84 -0.1
134,472 - GFF5033 0.84 -0.3
134,472 - GFF5033 0.84 +0.5
134,472 - GFF5033 0.84 +1.0
134,564 + +0.2
134,564 + -1.5
134,564 + +1.1
134,565 - +0.7
134,565 - -0.0
134,565 - -0.2
134,565 - -0.1
134,597 + -0.7
134,597 + +0.0
134,597 + +0.8
134,598 - +0.3
135,034 + +0.8
135,034 + -2.4
135,034 + +0.8
135,034 + -0.2
135,034 + -1.5
135,035 - -0.5
135,035 - +2.8
135,082 + GFF5035 0.13 -1.8
135,238 + GFF5035 0.24 +0.4
135,238 + GFF5035 0.24 +0.2
135,238 + GFF5035 0.24 +0.2
135,238 + GFF5035 0.24 +0.8
135,238 + GFF5035 0.24 -1.2
135,313 + GFF5035 0.29 -0.2
135,314 - GFF5035 0.29 +0.5
135,314 - GFF5035 0.29 +1.2
135,314 - GFF5035 0.29 +0.8
135,314 - GFF5035 0.29 -1.2
135,314 - GFF5035 0.29 -1.5
135,314 - GFF5035 0.29 +0.5
135,403 + GFF5035 0.36 -1.2
135,403 + GFF5035 0.36 -2.1
135,403 + GFF5035 0.36 +0.8
135,403 + GFF5035 0.36 -0.2
135,403 + GFF5035 0.36 -0.8
135,403 + GFF5035 0.36 -0.7
135,404 - GFF5035 0.36 -1.1
135,404 - GFF5035 0.36 -0.5
135,415 + GFF5035 0.36 -1.0
135,415 + GFF5035 0.36 -1.4
135,415 + GFF5035 0.36 -1.6
135,415 + GFF5035 0.36 -0.8
135,416 - GFF5035 0.37 -0.8
135,416 - GFF5035 0.37 -1.6
135,416 - GFF5035 0.37 -2.0
135,421 + GFF5035 0.37 +0.1
135,421 + GFF5035 0.37 -1.9
135,422 - GFF5035 0.37 -1.8
135,422 - GFF5035 0.37 +0.5
135,535 + GFF5035 0.45 -0.8
135,535 + GFF5035 0.45 +0.1
135,535 + GFF5035 0.45 -1.1
135,535 + GFF5035 0.45 +1.8
135,535 + GFF5035 0.45 +0.2
135,535 + GFF5035 0.45 +1.8
135,535 + GFF5035 0.45 -0.8
135,536 - GFF5035 0.45 -0.8
135,536 - GFF5035 0.45 +1.2
135,536 - GFF5035 0.45 +0.8
135,536 - GFF5035 0.45 -0.5
135,536 - GFF5035 0.45 -0.2
135,538 + GFF5035 0.45 -0.2
135,538 + GFF5035 0.45 +0.4
135,538 + GFF5035 0.45 -0.3
135,538 + GFF5035 0.45 -0.2
135,539 - GFF5035 0.45 -1.2
135,539 - GFF5035 0.45 -0.8
135,539 - GFF5035 0.45 -1.1
135,539 - GFF5035 0.45 +0.4
135,539 - GFF5035 0.45 -0.7
135,539 - GFF5035 0.45 -0.0
135,539 - GFF5035 0.45 -0.8
135,539 - GFF5035 0.45 -0.6
135,719 + GFF5035 0.58 -0.2
135,719 + GFF5035 0.58 -0.2
135,719 + GFF5035 0.58 -0.2
135,758 + GFF5035 0.61 -1.1
135,759 - GFF5035 0.61 -0.9
135,759 - GFF5035 0.61 -2.1
135,817 + GFF5035 0.65 +1.1
135,818 - GFF5035 0.65 -0.8
136,557 + GFF5036 0.22 -0.5
136,557 + GFF5036 0.22 -1.7
136,557 + GFF5036 0.22 +0.5
136,558 - GFF5036 0.22 -3.0
136,621 - GFF5036 0.28 -1.5
137,058 + GFF5036 0.65 -1.8
137,058 + GFF5036 0.65 +0.1
137,058 + GFF5036 0.65 -1.0
137,059 - GFF5036 0.65 -0.8
137,059 - GFF5036 0.65 -0.6
137,059 - GFF5036 0.65 -0.2
137,238 + GFF5036 0.81 -0.2
137,238 + GFF5036 0.81 -0.8
137,239 - GFF5036 0.81 -1.0
137,239 - GFF5036 0.81 -1.6
137,239 - GFF5036 0.81 -0.7
137,239 - GFF5036 0.81 +0.5

Or see this region's nucleotide sequence