Strain Fitness in Variovorax sp. SCN45 around GFF5029

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5027 and GFF5028 are separated by 143 nucleotidesGFF5028 and GFF5029 are separated by 52 nucleotidesGFF5029 and GFF5030 are separated by 46 nucleotidesGFF5030 and GFF5031 are separated by 54 nucleotides GFF5027 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 128,644 to 130,176 GFF5027 GFF5028 - hypothetical protein, at 130,320 to 130,739 GFF5028 GFF5029 - Transcriptional regulator, IclR family, at 130,792 to 131,652 GFF5029 GFF5030 - no description, at 131,699 to 131,815 GFF5030 GFF5031 - ABC-type spermidine/putrescine transport systems, ATPase components, at 131,870 to 132,943 GFF5031 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 129.940 kb on + strand, within GFF5027at 129.940 kb on + strand, within GFF5027at 129.940 kb on + strand, within GFF5027at 129.940 kb on + strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 129.941 kb on - strand, within GFF5027at 130.245 kb on + strandat 130.246 kb on - strandat 130.246 kb on - strandat 130.246 kb on - strandat 130.259 kb on + strandat 130.268 kb on + strandat 130.268 kb on + strandat 130.268 kb on + strandat 130.268 kb on + strandat 130.269 kb on - strandat 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.414 kb on + strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.415 kb on - strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.456 kb on + strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.457 kb on - strand, within GFF5028at 130.502 kb on + strand, within GFF5028at 130.502 kb on + strand, within GFF5028at 130.502 kb on + strand, within GFF5028at 130.503 kb on - strand, within GFF5028at 130.503 kb on - strand, within GFF5028at 130.503 kb on - strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.504 kb on + strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.505 kb on - strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.525 kb on + strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.526 kb on - strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.558 kb on + strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.559 kb on - strand, within GFF5028at 130.717 kb on + strandat 130.718 kb on - strandat 131.070 kb on - strand, within GFF5029at 131.070 kb on - strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.130 kb on - strand, within GFF5029at 131.444 kb on + strand, within GFF5029at 131.652 kb on + strandat 131.652 kb on + strandat 131.653 kb on - strandat 131.657 kb on - strandat 131.695 kb on + strandat 131.695 kb on + strandat 131.695 kb on + strandat 131.773 kb on + strand, within GFF5030at 131.774 kb on - strand, within GFF5030at 131.906 kb on + strandat 131.906 kb on + strandat 131.907 kb on - strandat 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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129,940 + GFF5027 0.85 +0.2
129,940 + GFF5027 0.85 -0.0
129,940 + GFF5027 0.85 -0.4
129,940 + GFF5027 0.85 -0.7
129,941 - GFF5027 0.85 -0.9
129,941 - GFF5027 0.85 -0.7
129,941 - GFF5027 0.85 +0.4
129,941 - GFF5027 0.85 +0.5
129,941 - GFF5027 0.85 -1.1
129,941 - GFF5027 0.85 +0.0
130,245 + -0.5
130,246 - +0.6
130,246 - -1.7
130,246 - -0.2
130,259 + -0.1
130,268 + +0.1
130,268 + -0.3
130,268 + -0.1
130,268 + -0.5
130,269 - -0.3
130,414 + GFF5028 0.22 -1.6
130,414 + GFF5028 0.22 -1.0
130,414 + GFF5028 0.22 -0.7
130,414 + GFF5028 0.22 -0.4
130,414 + GFF5028 0.22 -0.3
130,414 + GFF5028 0.22 +0.2
130,414 + GFF5028 0.22 -1.4
130,414 + GFF5028 0.22 -0.5
130,414 + GFF5028 0.22 -0.3
130,414 + GFF5028 0.22 -1.0
130,414 + GFF5028 0.22 +0.1
130,415 - GFF5028 0.23 -1.4
130,415 - GFF5028 0.23 -0.1
130,415 - GFF5028 0.23 -0.7
130,415 - GFF5028 0.23 -0.5
130,415 - GFF5028 0.23 -0.5
130,415 - GFF5028 0.23 +0.6
130,415 - GFF5028 0.23 -0.2
130,415 - GFF5028 0.23 -0.3
130,415 - GFF5028 0.23 -0.9
130,456 + GFF5028 0.32 -1.0
130,456 + GFF5028 0.32 -1.1
130,456 + GFF5028 0.32 -0.1
130,456 + GFF5028 0.32 -0.6
130,456 + GFF5028 0.32 -0.6
130,456 + GFF5028 0.32 +0.1
130,456 + GFF5028 0.32 -0.3
130,457 - GFF5028 0.33 -0.1
130,457 - GFF5028 0.33 +0.3
130,457 - GFF5028 0.33 -0.5
130,457 - GFF5028 0.33 -0.1
130,457 - GFF5028 0.33 -0.7
130,457 - GFF5028 0.33 -0.1
130,457 - GFF5028 0.33 -0.5
130,457 - GFF5028 0.33 +0.1
130,457 - GFF5028 0.33 -0.0
130,502 + GFF5028 0.43 -1.5
130,502 + GFF5028 0.43 +0.4
130,502 + GFF5028 0.43 -0.2
130,503 - GFF5028 0.44 +0.3
130,503 - GFF5028 0.44 -0.0
130,503 - GFF5028 0.44 -0.1
130,504 + GFF5028 0.44 -0.4
130,504 + GFF5028 0.44 -1.0
130,504 + GFF5028 0.44 +0.4
130,504 + GFF5028 0.44 -0.4
130,504 + GFF5028 0.44 +0.2
130,504 + GFF5028 0.44 -0.7
130,504 + GFF5028 0.44 +0.4
130,504 + GFF5028 0.44 -0.2
130,504 + GFF5028 0.44 +0.0
130,504 + GFF5028 0.44 +0.3
130,504 + GFF5028 0.44 -0.4
130,504 + GFF5028 0.44 +3.4
130,504 + GFF5028 0.44 +0.0
130,504 + GFF5028 0.44 +0.7
130,504 + GFF5028 0.44 +0.3
130,504 + GFF5028 0.44 -0.3
130,504 + GFF5028 0.44 -1.3
130,504 + GFF5028 0.44 -0.2
130,504 + GFF5028 0.44 -0.1
130,504 + GFF5028 0.44 +1.1
130,504 + GFF5028 0.44 -0.5
130,504 + GFF5028 0.44 -0.2
130,504 + GFF5028 0.44 +1.2
130,504 + GFF5028 0.44 +0.5
130,504 + GFF5028 0.44 -0.5
130,504 + GFF5028 0.44 -0.6
130,504 + GFF5028 0.44 -0.7
130,504 + GFF5028 0.44 -0.4
130,504 + GFF5028 0.44 -0.7
130,504 + GFF5028 0.44 -0.0
130,504 + GFF5028 0.44 -0.2
130,504 + GFF5028 0.44 -0.6
130,504 + GFF5028 0.44 +0.3
130,504 + GFF5028 0.44 -1.4
130,504 + GFF5028 0.44 -0.4
130,504 + GFF5028 0.44 +1.0
130,505 - GFF5028 0.44 -1.3
130,505 - GFF5028 0.44 +0.7
130,505 - GFF5028 0.44 +0.2
130,505 - GFF5028 0.44 -0.9
130,505 - GFF5028 0.44 -0.8
130,505 - GFF5028 0.44 +0.8
130,505 - GFF5028 0.44 +2.1
130,505 - GFF5028 0.44 -0.6
130,505 - GFF5028 0.44 -0.0
130,505 - GFF5028 0.44 +0.1
130,505 - GFF5028 0.44 -0.7
130,505 - GFF5028 0.44 +0.5
130,505 - GFF5028 0.44 +0.2
130,505 - GFF5028 0.44 +0.8
130,505 - GFF5028 0.44 -0.5
130,505 - GFF5028 0.44 -0.9
130,505 - GFF5028 0.44 -0.6
130,505 - GFF5028 0.44 -0.1
130,505 - GFF5028 0.44 -0.0
130,505 - GFF5028 0.44 +0.8
130,505 - GFF5028 0.44 +0.5
130,505 - GFF5028 0.44 -0.4
130,505 - GFF5028 0.44 -0.5
130,505 - GFF5028 0.44 -0.4
130,505 - GFF5028 0.44 +0.3
130,505 - GFF5028 0.44 +0.2
130,505 - GFF5028 0.44 +1.8
130,505 - GFF5028 0.44 -0.7
130,505 - GFF5028 0.44 -0.7
130,505 - GFF5028 0.44 -0.3
130,505 - GFF5028 0.44 +0.0
130,505 - GFF5028 0.44 +0.0
130,505 - GFF5028 0.44 +0.7
130,525 + GFF5028 0.49 -0.5
130,525 + GFF5028 0.49 +0.0
130,525 + GFF5028 0.49 +0.2
130,525 + GFF5028 0.49 -0.2
130,525 + GFF5028 0.49 -0.0
130,525 + GFF5028 0.49 +0.3
130,525 + GFF5028 0.49 -0.2
130,525 + GFF5028 0.49 -0.8
130,525 + GFF5028 0.49 -0.0
130,525 + GFF5028 0.49 +0.3
130,525 + GFF5028 0.49 -0.3
130,525 + GFF5028 0.49 -0.6
130,525 + GFF5028 0.49 +1.6
130,526 - GFF5028 0.49 -0.4
130,526 - GFF5028 0.49 -0.2
130,526 - GFF5028 0.49 -0.6
130,526 - GFF5028 0.49 +0.2
130,526 - GFF5028 0.49 -0.9
130,526 - GFF5028 0.49 -0.9
130,526 - GFF5028 0.49 +0.1
130,526 - GFF5028 0.49 +1.8
130,558 + GFF5028 0.57 -0.0
130,558 + GFF5028 0.57 -0.5
130,558 + GFF5028 0.57 -0.2
130,558 + GFF5028 0.57 -0.7
130,558 + GFF5028 0.57 +0.1
130,558 + GFF5028 0.57 -0.6
130,558 + GFF5028 0.57 -0.3
130,558 + GFF5028 0.57 -0.7
130,558 + GFF5028 0.57 -0.0
130,558 + GFF5028 0.57 -0.6
130,558 + GFF5028 0.57 +0.3
130,558 + GFF5028 0.57 -0.5
130,558 + GFF5028 0.57 -0.4
130,558 + GFF5028 0.57 -0.5
130,558 + GFF5028 0.57 -1.7
130,558 + GFF5028 0.57 -0.3
130,558 + GFF5028 0.57 -0.5
130,559 - GFF5028 0.57 +1.0
130,559 - GFF5028 0.57 -0.1
130,559 - GFF5028 0.57 +0.6
130,559 - GFF5028 0.57 -0.5
130,559 - GFF5028 0.57 -0.6
130,559 - GFF5028 0.57 +0.7
130,559 - GFF5028 0.57 -0.2
130,559 - GFF5028 0.57 -0.2
130,559 - GFF5028 0.57 +0.5
130,559 - GFF5028 0.57 +1.8
130,559 - GFF5028 0.57 +0.6
130,559 - GFF5028 0.57 -0.5
130,559 - GFF5028 0.57 +0.7
130,717 + -0.5
130,718 - -0.8
131,070 - GFF5029 0.32 +0.6
131,070 - GFF5029 0.32 -1.0
131,108 + GFF5029 0.37 -0.7
131,108 + GFF5029 0.37 +0.1
131,108 + GFF5029 0.37 -1.7
131,109 - GFF5029 0.37 -0.1
131,109 - GFF5029 0.37 +0.1
131,109 - GFF5029 0.37 -0.9
131,109 - GFF5029 0.37 -0.8
131,109 - GFF5029 0.37 +0.5
131,109 - GFF5029 0.37 -0.6
131,120 + GFF5029 0.38 +1.4
131,120 + GFF5029 0.38 +0.1
131,120 + GFF5029 0.38 +0.8
131,121 - GFF5029 0.38 -0.2
131,121 - GFF5029 0.38 -0.3
131,121 - GFF5029 0.38 +0.6
131,121 - GFF5029 0.38 +0.2
131,121 - GFF5029 0.38 -0.0
131,129 + GFF5029 0.39 +0.1
131,129 + GFF5029 0.39 +0.5
131,129 + GFF5029 0.39 -0.2
131,129 + GFF5029 0.39 -0.1
131,130 - GFF5029 0.39 -0.3
131,444 + GFF5029 0.76 -1.2
131,652 + -0.1
131,652 + -0.7
131,653 - +1.2
131,657 - -0.2
131,695 + -0.7
131,695 + +1.1
131,695 + -0.5
131,773 + GFF5030 0.63 -0.3
131,774 - GFF5030 0.64 +1.0
131,906 + -0.1
131,906 + -0.1
131,907 - -0.4
132,119 + GFF5031 0.23 -1.2
132,119 + GFF5031 0.23 -0.3
132,119 + GFF5031 0.23 -0.1
132,119 + GFF5031 0.23 -0.4
132,119 + GFF5031 0.23 -1.9
132,119 + GFF5031 0.23 -0.3
132,119 + GFF5031 0.23 -0.2
132,119 + GFF5031 0.23 -0.2
132,119 + GFF5031 0.23 -1.0
132,119 + GFF5031 0.23 -0.0
132,120 - GFF5031 0.23 +1.3
132,120 - GFF5031 0.23 -0.3
132,120 - GFF5031 0.23 +0.2
132,120 - GFF5031 0.23 +0.6
132,120 - GFF5031 0.23 -0.9
132,120 - GFF5031 0.23 -1.6
132,533 + GFF5031 0.62 -0.6
132,533 + GFF5031 0.62 -0.1
132,533 + GFF5031 0.62 -0.8
132,533 + GFF5031 0.62 +0.3
132,533 + GFF5031 0.62 -0.0
132,533 + GFF5031 0.62 -1.5
132,533 + GFF5031 0.62 -0.2
132,533 + GFF5031 0.62 -0.1
132,533 + GFF5031 0.62 -1.1
132,533 + GFF5031 0.62 +1.4
132,534 - GFF5031 0.62 -1.7
132,534 - GFF5031 0.62 +1.8
132,534 - GFF5031 0.62 +0.2
132,534 - GFF5031 0.62 -0.5
132,534 - GFF5031 0.62 -0.2
132,534 - GFF5031 0.62 +1.1
132,534 - GFF5031 0.62 -0.5
132,534 - GFF5031 0.62 -3.4

Or see this region's nucleotide sequence