Strain Fitness in Variovorax sp. SCN45 around GFF4980

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
78,848	+				-0.2
78,848	+				-0.8
78,848	+				+0.4
78,848	+				-0.0
78,848	+				-0.3
78,848	+				-0.4
78,848	+				-1.0
78,848	+				-0.0
78,848	+				-0.4
78,848	+				-1.1
78,848	+				-0.2
78,849	-				-0.2
78,849	-				+0.2
78,849	-				+0.2
78,849	-				-1.2
78,849	-				+0.9
78,849	-				-0.4
78,849	-				-0.2
78,849	-				-0.9
78,965	+				+0.2
78,965	+				+0.6
78,965	+				-0.1
78,965	+				+0.8
78,966	-				+0.6
78,966	-				-0.1
78,966	-				+0.4
78,966	-				-0.7
78,967	-				-0.4
79,031	+				-0.2
79,031	+				+0.5
79,031	+				-1.2
79,031	+				+0.4
79,031	+				-0.4
79,031	+				+0.1
79,031	+				-1.4
79,031	+				-0.6
79,031	+				+1.8
79,031	+				-1.2
79,031	+				-0.3
79,031	+				-0.8
79,031	+				-0.3
79,031	+				+0.2
79,031	+				-0.7
79,031	+				-0.7
79,032	-				+0.6
79,032	-				-0.5
79,032	-				+1.8
79,032	-				+1.4
79,032	-				-0.6
79,032	-				+1.0
79,032	-				-0.1
79,032	-				-0.2
79,032	-				-0.1
79,032	-				-0.3
79,032	-				-0.4
79,032	-				+0.2
79,032	-				+1.8
79,032	-				-1.0
79,032	-				+0.2
79,032	-				-1.0
79,032	-				+0.6
79,032	-				+0.5
79,037	+				+1.1
79,037	+				+0.2
79,037	+				+0.2
79,037	+				+0.4
79,037	+				-0.1
79,037	+				-0.1
79,038	-				+0.6
79,038	-				-0.6
79,038	-				-0.8
79,038	-				+0.5
79,038	-				-0.9
79,038	-				-0.0
79,038	-				-0.7
79,038	-				-0.5
79,073	+				-0.3
79,073	+				-0.4
79,073	+				-0.0
79,073	+				+0.6
79,073	+				-1.1
79,073	+				-0.7
79,074	-				+0.1
79,074	-				-0.3
79,074	-				+2.8
79,074	-				-0.9
79,074	-				-0.0
79,139	+		GFF4979	0.16	+1.2
79,139	+		GFF4979	0.16	-0.1
79,139	+		GFF4979	0.16	+0.8
79,139	+		GFF4979	0.16	-2.8
79,139	+		GFF4979	0.16	-0.0
79,140	-		GFF4979	0.16	-0.2
79,140	-		GFF4979	0.16	+0.8
79,140	-		GFF4979	0.16	-1.0
79,140	-		GFF4979	0.16	-0.2
79,140	-		GFF4979	0.16	+0.0
79,140	-		GFF4979	0.16	-0.0
79,140	-		GFF4979	0.16	-0.1
79,140	-		GFF4979	0.16	-0.4
79,199	+		GFF4979	0.24	-0.1
79,199	+		GFF4979	0.24	+0.5
79,199	+		GFF4979	0.24	+0.8
79,199	+		GFF4979	0.24	-1.7
79,199	+		GFF4979	0.24	+0.1
79,199	+		GFF4979	0.24	+0.5
79,200	-		GFF4979	0.25	-0.8
79,200	-		GFF4979	0.25	+1.5
79,200	-		GFF4979	0.25	-1.0
79,200	-		GFF4979	0.25	-1.8
79,200	-		GFF4979	0.25	-0.6
79,200	-		GFF4979	0.25	+0.5
79,200	-		GFF4979	0.25	-0.7
79,200	-		GFF4979	0.25	+0.2
79,208	+		GFF4979	0.26	-0.7
79,208	+		GFF4979	0.26	-0.1
79,208	+		GFF4979	0.26	+0.4
79,208	+		GFF4979	0.26	-0.7
79,209	-		GFF4979	0.26	+0.7
79,209	-		GFF4979	0.26	+1.4
79,209	-		GFF4979	0.26	-0.5
79,209	-		GFF4979	0.26	-0.7
79,262	+		GFF4979	0.34	-0.4
79,262	+		GFF4979	0.34	+0.3
79,263	-		GFF4979	0.34	-0.1
79,275	-		GFF4979	0.36	+0.1
79,289	+		GFF4979	0.38	+0.2
79,289	+		GFF4979	0.38	-0.9
79,289	+		GFF4979	0.38	-0.9
79,289	+		GFF4979	0.38	-0.4
79,290	-		GFF4979	0.38	-0.5
79,319	+		GFF4979	0.42	-0.0
79,319	+		GFF4979	0.42	-0.3
79,319	+		GFF4979	0.42	+0.4
79,320	-		GFF4979	0.42	-0.1
79,320	-		GFF4979	0.42	-0.2
79,406	+		GFF4979	0.54	-1.2
79,406	+		GFF4979	0.54	+0.4
79,406	+		GFF4979	0.54	-0.1
79,406	+		GFF4979	0.54	-0.7
79,406	+		GFF4979	0.54	+0.3
79,406	+		GFF4979	0.54	-0.7
79,407	-		GFF4979	0.55	+0.1
79,407	-		GFF4979	0.55	-0.3
79,407	-		GFF4979	0.55	+2.4
79,407	-		GFF4979	0.55	+0.6
79,407	-		GFF4979	0.55	-0.4
79,407	-		GFF4979	0.55	-0.1
79,407	-		GFF4979	0.55	-0.4
79,407	-		GFF4979	0.55	+0.3
79,526	+		GFF4979	0.72	-0.0
79,526	+		GFF4979	0.72	-1.3
79,526	+		GFF4979	0.72	-0.4
79,526	+		GFF4979	0.72	-0.6
79,526	+		GFF4979	0.72	-0.1
79,526	+		GFF4979	0.72	-0.0
79,526	+		GFF4979	0.72	+2.1
79,526	+		GFF4979	0.72	-0.2
79,526	+		GFF4979	0.72	-0.9
79,526	+		GFF4979	0.72	-0.1
79,526	+		GFF4979	0.72	+0.8
79,527	-		GFF4979	0.72	-1.2
79,527	-		GFF4979	0.72	+2.4
79,527	-		GFF4979	0.72	-0.3
79,527	-		GFF4979	0.72	-0.4
79,527	-		GFF4979	0.72	-0.0
79,527	-		GFF4979	0.72	-0.5
79,527	-		GFF4979	0.72	-0.3
79,527	-		GFF4979	0.72	-0.5
79,527	-		GFF4979	0.72	+0.5
79,527	-		GFF4979	0.72	-1.2
79,527	-		GFF4979	0.72	-0.2
79,527	-		GFF4979	0.72	-0.9
79,527	-		GFF4979	0.72	-0.1
79,527	-		GFF4979	0.72	+0.5
79,527	-		GFF4979	0.72	+0.0
79,527	-		GFF4979	0.72	-0.7
79,527	-		GFF4979	0.72	-0.6
79,532	+		GFF4979	0.73	+0.2
79,532	+		GFF4979	0.73	-0.1
79,532	+		GFF4979	0.73	-0.5
79,532	+		GFF4979	0.73	-0.3
79,532	+		GFF4979	0.73	-1.5
79,532	+		GFF4979	0.73	-0.2
79,532	+		GFF4979	0.73	+0.2
79,532	+		GFF4979	0.73	-0.2
79,533	-		GFF4979	0.73	-1.4
79,533	-		GFF4979	0.73	+0.1
79,533	-		GFF4979	0.73	+0.2
79,533	-		GFF4979	0.73	+0.6
79,533	-		GFF4979	0.73	-0.8
79,533	-		GFF4979	0.73	-0.0
79,533	-		GFF4979	0.73	-0.7
79,533	-		GFF4979	0.73	-0.6
79,626	+		GFF4979	0.86	+1.5
79,627	-		GFF4979	0.87	+0.8
79,627	-		GFF4979	0.87	-0.9
79,759	-				-0.8
79,774	+				+0.1
79,774	+				+0.4
79,774	+				-0.7
79,775	-				-0.1
79,775	-				+0.8
79,783	+				+0.4
79,783	+				-0.2
79,784	-				+0.8
79,876	+		GFF4980	0.22	+0.4
79,876	+		GFF4980	0.22	-1.3
79,877	-		GFF4980	0.22	+0.6
79,877	-		GFF4980	0.22	+0.4
79,877	-		GFF4980	0.22	-1.0
79,877	-		GFF4980	0.22	-0.3
79,877	-		GFF4980	0.22	-0.2
79,877	-		GFF4980	0.22	+0.4
79,877	-		GFF4980	0.22	+0.3
79,877	-		GFF4980	0.22	-0.1
79,877	-		GFF4980	0.22	-0.2
79,888	+		GFF4980	0.24	+0.8
79,889	-		GFF4980	0.24	+1.4
79,924	+		GFF4980	0.32	+0.4
79,924	+		GFF4980	0.32	+0.2
79,924	+		GFF4980	0.32	+0.4
79,924	+		GFF4980	0.32	+0.1
79,924	+		GFF4980	0.32	-0.3
79,924	+		GFF4980	0.32	-0.6
79,925	-		GFF4980	0.32	-1.7
79,925	-		GFF4980	0.32	+0.1
79,925	-		GFF4980	0.32	-0.6
79,925	-		GFF4980	0.32	+1.1
79,925	-		GFF4980	0.32	-1.2
79,948	+		GFF4980	0.37	-0.9
79,949	-		GFF4980	0.37	-0.1
79,949	-		GFF4980	0.37	+1.0
79,949	-		GFF4980	0.37	-1.2
79,949	-		GFF4980	0.37	-0.8
80,292	+				+0.1
80,292	+				+0.5
80,293	-				-0.3
80,293	-				-1.4
80,293	-				+1.3
80,295	+				-0.5
80,295	+				+0.1
80,295	+				-0.5
80,295	+				+0.5
80,295	+				-0.3
80,295	+				-0.8
80,295	+				-0.3
80,295	+				+0.2
80,295	+				+0.2
80,295	+				-0.1
80,296	-				-0.2
80,296	-				-0.9
80,296	-				+0.1
80,296	-				+0.1
80,310	+				+0.5
80,310	+				-0.2
80,310	+				-1.3
80,310	+				+0.5
80,310	+				-0.3
80,311	-				-1.7
80,311	-				+0.1
80,340	-				-2.3
80,346	-				-0.1
80,346	-				-0.2
80,349	+				-0.8
80,349	+				-0.7
80,349	+				+0.4
80,349	+				-1.2
80,349	+				+0.1
80,349	+				+0.2
80,350	-				+0.4
80,350	-				-0.1
80,350	-				-2.2
80,350	-				+0.5
80,350	-				-1.0
80,636	+		GFF4981	0.13	-0.0
80,636	+		GFF4981	0.13	-0.2
80,636	+		GFF4981	0.13	-0.1
80,637	-		GFF4981	0.13	-0.6
80,637	-		GFF4981	0.13	+0.2
80,637	-		GFF4981	0.13	-0.2
80,637	-		GFF4981	0.13	-0.0
80,942	+		GFF4981	0.27	-0.0
80,943	-		GFF4981	0.27	+0.2
80,943	-		GFF4981	0.27	-0.6
80,969	+		GFF4981	0.28	-1.0
80,969	+		GFF4981	0.28	-0.6
80,969	+		GFF4981	0.28	-0.5
80,970	-		GFF4981	0.28	+0.5
80,970	-		GFF4981	0.28	+0.2
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	-2.5
80,996	+		GFF4981	0.29	-1.3
80,996	+		GFF4981	0.29	-0.0
80,996	+		GFF4981	0.29	+0.1
80,996	+		GFF4981	0.29	+0.8
80,996	+		GFF4981	0.29	-0.4
80,996	+		GFF4981	0.29	-0.4
80,996	+		GFF4981	0.29	-0.9
80,996	+		GFF4981	0.29	+0.9
80,996	+		GFF4981	0.29	-1.0
80,996	+		GFF4981	0.29	-0.2
80,996	+		GFF4981	0.29	-0.4
80,996	+		GFF4981	0.29	-0.7
80,996	+		GFF4981	0.29	-1.1
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	+0.0
80,996	+		GFF4981	0.29	+0.2
80,996	+		GFF4981	0.29	-0.6
80,996	+		GFF4981	0.29	+1.0
80,996	+		GFF4981	0.29	+0.6
80,996	+		GFF4981	0.29	-0.8
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	+2.4
80,997	-		GFF4981	0.29	+0.3
80,997	-		GFF4981	0.29	-2.0
80,997	-		GFF4981	0.29	+0.3
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	+0.4
80,997	-		GFF4981	0.29	+0.3
80,997	-		GFF4981	0.29	-0.9
80,997	-		GFF4981	0.29	+0.1
80,997	-		GFF4981	0.29	+1.2
80,997	-		GFF4981	0.29	-0.1
80,997	-		GFF4981	0.29	-0.3
80,997	-		GFF4981	0.29	+0.1
80,997	-		GFF4981	0.29	-0.2
80,997	-		GFF4981	0.29	-0.7
80,997	-		GFF4981	0.29	+0.8