Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4930 and GFF4931 overlap by 17 nucleotides GFF4931 and GFF4932 are separated by 13 nucleotides GFF4932 and GFF4933 overlap by 11 nucleotides
GFF4930 - Transcriptional regulator, LysR family, at 23,270 to 24,187
GFF4930
GFF4931 - peptidase, family M14, at 24,171 to 25,904
GFF4931
GFF4932 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 25,918 to 26,727
GFF4932
GFF4933 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 26,717 to 27,565
GFF4933
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.175 kb on - strand at 23.175 kb on - strand at 23.210 kb on - strand at 23.233 kb on - strand at 23.238 kb on + strand at 23.239 kb on - strand at 23.258 kb on + strand at 23.259 kb on - strand at 23.259 kb on - strand at 23.263 kb on - strand at 23.379 kb on + strand, within GFF4930 at 23.380 kb on - strand, within GFF4930 at 23.380 kb on - strand, within GFF4930 at 23.861 kb on + strand, within GFF4930 at 23.861 kb on + strand, within GFF4930 at 23.862 kb on - strand, within GFF4930 at 23.862 kb on - strand, within GFF4930 at 23.862 kb on - strand, within GFF4930 at 23.862 kb on - strand, within GFF4930 at 24.105 kb on - strand at 24.391 kb on + strand, within GFF4931 at 24.391 kb on + strand, within GFF4931 at 24.391 kb on + strand, within GFF4931 at 24.391 kb on + strand, within GFF4931 at 24.392 kb on - strand, within GFF4931 at 24.392 kb on - strand, within GFF4931 at 24.392 kb on - strand, within GFF4931 at 24.392 kb on - strand, within GFF4931 at 24.392 kb on - strand, within GFF4931 at 24.631 kb on + strand, within GFF4931 at 24.632 kb on - strand, within GFF4931 at 24.820 kb on + strand, within GFF4931 at 24.821 kb on - strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.835 kb on + strand, within GFF4931 at 24.836 kb on - strand, within GFF4931 at 24.836 kb on - strand, within GFF4931 at 24.872 kb on - strand, within GFF4931 at 25.186 kb on + strand, within GFF4931 at 25.186 kb on + strand, within GFF4931 at 25.225 kb on + strand, within GFF4931 at 25.225 kb on + strand, within GFF4931 at 25.318 kb on + strand, within GFF4931 at 25.318 kb on + strand, within GFF4931 at 25.319 kb on - strand, within GFF4931 at 25.531 kb on + strand, within GFF4931 at 25.813 kb on + strand at 25.813 kb on + strand at 25.813 kb on + strand at 25.814 kb on - strand at 25.880 kb on - strand at 25.880 kb on - strand at 25.953 kb on - strand at 25.980 kb on - strand at 25.980 kb on - strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.826 kb on + strand, within GFF4933 at 26.826 kb on + strand, within GFF4933 at 26.827 kb on - strand, within GFF4933 at 26.827 kb on - strand, within GFF4933 at 26.887 kb on - strand, within GFF4933
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 23,175 - -0.2 23,175 - +0.2 23,210 - -2.3 23,233 - -1.5 23,238 + -0.4 23,239 - +0.1 23,258 + +0.5 23,259 - +0.0 23,259 - -1.2 23,263 - +0.1 23,379 + GFF4930 0.12 -1.2 23,380 - GFF4930 0.12 -0.1 23,380 - GFF4930 0.12 -0.9 23,861 + GFF4930 0.64 -2.0 23,861 + GFF4930 0.64 -0.5 23,862 - GFF4930 0.64 +0.1 23,862 - GFF4930 0.64 -0.5 23,862 - GFF4930 0.64 -0.8 23,862 - GFF4930 0.64 +0.6 24,105 - +0.2 24,391 + GFF4931 0.13 +0.5 24,391 + GFF4931 0.13 -0.1 24,391 + GFF4931 0.13 +1.0 24,391 + GFF4931 0.13 -0.6 24,392 - GFF4931 0.13 +1.0 24,392 - GFF4931 0.13 -0.2 24,392 - GFF4931 0.13 -0.7 24,392 - GFF4931 0.13 -0.2 24,392 - GFF4931 0.13 +0.1 24,631 + GFF4931 0.27 -0.0 24,632 - GFF4931 0.27 -0.4 24,820 + GFF4931 0.37 +0.1 24,821 - GFF4931 0.37 -0.7 24,835 + GFF4931 0.38 -0.3 24,835 + GFF4931 0.38 +0.1 24,835 + GFF4931 0.38 -0.8 24,835 + GFF4931 0.38 +0.4 24,835 + GFF4931 0.38 +0.7 24,835 + GFF4931 0.38 +0.2 24,836 - GFF4931 0.38 +0.5 24,836 - GFF4931 0.38 +0.8 24,872 - GFF4931 0.40 +0.8 25,186 + GFF4931 0.59 -0.0 25,186 + GFF4931 0.59 +0.5 25,225 + GFF4931 0.61 -0.2 25,225 + GFF4931 0.61 +0.1 25,318 + GFF4931 0.66 -0.6 25,318 + GFF4931 0.66 -0.3 25,319 - GFF4931 0.66 +0.3 25,531 + GFF4931 0.78 +0.1 25,813 + -1.1 25,813 + +0.4 25,813 + -0.8 25,814 - -0.1 25,880 - -0.2 25,880 - -0.3 25,953 - -0.7 25,980 - +0.3 25,980 - -0.2 26,657 + -1.0 26,657 + +0.5 26,657 + +0.3 26,657 + -0.0 26,826 + GFF4933 0.13 +0.0 26,826 + GFF4933 0.13 +0.2 26,827 - GFF4933 0.13 -0.1 26,827 - GFF4933 0.13 -0.3 26,887 - GFF4933 0.20 +0.5
Or see this region's nucleotide sequence