Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4846 and GFF4847 are separated by 19 nucleotides GFF4847 and GFF4848 overlap by 4 nucleotides GFF4848 and GFF4849 overlap by 4 nucleotides GFF4849 and GFF4850 overlap by 4 nucleotides GFF4850 and GFF4851 overlap by 4 nucleotides
GFF4846 - Conjugative transfer protein TrbE, at 215,637 to 218,114
GFF4846
GFF4847 - Conjugative transfer protein TrbD, at 218,134 to 218,418
GFF4847
GFF4848 - Conjugative transfer protein TrbC, at 218,415 to 218,807
GFF4848
GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841
GFF4849
GFF4850 - CopG domain-containing protein, at 219,838 to 220,302
GFF4850
GFF4851 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 220,299 to 222,317
GFF4851
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.944 kb on - strand at 218.021 kb on + strand at 218.021 kb on + strand at 218.022 kb on - strand at 218.022 kb on - strand at 218.022 kb on - strand at 218.119 kb on + strand at 218.119 kb on + strand at 218.120 kb on - strand at 218.135 kb on + strand at 218.136 kb on - strand at 218.136 kb on - strand at 218.163 kb on + strand, within GFF4847 at 218.164 kb on - strand, within GFF4847 at 218.419 kb on - strand at 218.419 kb on - strand at 218.777 kb on + strand at 218.902 kb on - strand at 218.902 kb on - strand at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.120 kb on - strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.246 kb on - strand, within GFF4849 at 219.453 kb on + strand, within GFF4849 at 219.841 kb on + strand at 219.841 kb on + strand at 219.842 kb on - strand at 219.842 kb on - strand at 219.842 kb on - strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.681 kb on + strand, within GFF4851 at 220.681 kb on + strand, within GFF4851 at 220.682 kb on - strand, within GFF4851 at 220.682 kb on - strand, within GFF4851 at 220.684 kb on + strand, within GFF4851 at 220.685 kb on - strand, within GFF4851 at 220.758 kb on + strand, within GFF4851 at 220.758 kb on + strand, within GFF4851 at 220.759 kb on - strand, within GFF4851 at 220.759 kb on - strand, within GFF4851 at 220.759 kb on - strand, within GFF4851
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 217,943 + -0.1 217,943 + -0.5 217,943 + +1.1 217,943 + -0.1 217,943 + -0.5 217,943 + -0.2 217,944 - -1.1 217,944 - +0.9 217,944 - -0.1 217,944 - -0.5 218,021 + -0.9 218,021 + -0.1 218,022 - +0.0 218,022 - -2.5 218,022 - -0.3 218,119 + +0.4 218,119 + -1.4 218,120 - -0.1 218,135 + -0.0 218,136 - +0.7 218,136 - +0.1 218,163 + GFF4847 0.10 +0.9 218,164 - GFF4847 0.11 +0.3 218,419 - +1.1 218,419 - +0.7 218,777 + -0.2 218,902 - -1.1 218,902 - +0.6 219,119 + GFF4849 0.30 +0.1 219,119 + GFF4849 0.30 -1.2 219,119 + GFF4849 0.30 -0.7 219,120 - GFF4849 0.30 -0.2 219,245 + GFF4849 0.42 -0.2 219,245 + GFF4849 0.42 -0.7 219,246 - GFF4849 0.43 -0.4 219,453 + GFF4849 0.63 -0.4 219,841 + +0.6 219,841 + +0.2 219,842 - -0.4 219,842 - -1.0 219,842 - +0.1 220,302 + +0.7 220,302 + -2.0 220,302 + -0.2 220,302 + -1.2 220,302 + -0.6 220,302 + +0.5 220,302 + -0.4 220,303 - -0.2 220,303 - +0.0 220,303 - -0.3 220,303 - -0.5 220,303 - +0.1 220,303 - +0.8 220,447 + -0.4 220,447 + +0.5 220,447 + +0.1 220,447 + +1.7 220,447 + -0.7 220,447 + -0.3 220,447 + +0.1 220,448 - +1.2 220,448 - +0.3 220,448 - -0.4 220,448 - -1.0 220,681 + GFF4851 0.19 +0.1 220,681 + GFF4851 0.19 +0.5 220,682 - GFF4851 0.19 -0.5 220,682 - GFF4851 0.19 +0.2 220,684 + GFF4851 0.19 -1.6 220,685 - GFF4851 0.19 -0.0 220,758 + GFF4851 0.23 -0.2 220,758 + GFF4851 0.23 +0.7 220,759 - GFF4851 0.23 +0.1 220,759 - GFF4851 0.23 -0.6 220,759 - GFF4851 0.23 +0.0
Or see this region's nucleotide sequence