Strain Fitness in Variovorax sp. SCN45 around GFF4723

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4722 and GFF4723 are separated by 46 nucleotidesGFF4723 and GFF4724 are separated by 87 nucleotidesGFF4724 and GFF4725 overlap by 4 nucleotides GFF4722 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 83,619 to 84,887 GFF4722 GFF4723 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 84,934 to 86,052 GFF4723 GFF4724 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 86,140 to 86,949 GFF4724 GFF4725 - Anthranilate phosphoribosyltransferase-like protein, at 86,946 to 87,851 GFF4725 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 83.990 kb on - strand, within GFF4722at 84.215 kb on - strand, within GFF4722at 84.215 kb on - strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.382 kb on + strand, within GFF4722at 84.383 kb on - strand, within GFF4722at 84.383 kb on - strand, within GFF4722at 84.383 kb on - strand, within GFF4722at 84.383 kb on - strand, within GFF4722at 84.383 kb on - strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.406 kb on + strand, within GFF4722at 84.407 kb on - strand, within GFF4722at 84.407 kb on - strand, within GFF4722at 84.407 kb on - strand, within GFF4722at 84.407 kb on - strand, within GFF4722at 84.407 kb on - strand, within GFF4722at 84.454 kb on + strand, within GFF4722at 84.455 kb on - strand, within GFF4722at 84.688 kb on + strand, within GFF4722at 84.763 kb on + strandat 84.763 kb on + strandat 84.764 kb on - strandat 85.175 kb on + strand, within GFF4723at 85.175 kb on + strand, within GFF4723at 85.175 kb on + strand, within GFF4723at 85.175 kb on + strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.176 kb on - strand, within GFF4723at 85.187 kb on + strand, within GFF4723at 85.188 kb on - strand, within GFF4723at 85.188 kb on - strand, within GFF4723at 85.358 kb on + strand, within GFF4723at 85.358 kb on + strand, within GFF4723at 85.359 kb on - strand, within GFF4723at 85.359 kb on - strand, within GFF4723at 85.359 kb on - strand, within GFF4723at 85.359 kb on - strand, within GFF4723at 85.479 kb on - strand, within GFF4723at 85.598 kb on - strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.931 kb on + strand, within GFF4723at 85.932 kb on - strand, within GFF4723at 85.932 kb on - strand, within GFF4723at 85.932 kb on - strand, within GFF4723at 85.992 kb on - strandat 85.992 kb on - strandat 85.992 kb on - strandat 86.390 kb on + strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.391 kb on - strand, within GFF4724at 86.417 kb on + strand, within GFF4724at 86.417 kb on + strand, within GFF4724at 86.418 kb on - strand, within GFF4724at 86.786 kb on + strand, within GFF4724at 86.786 kb on + strand, within GFF4724at 86.786 kb on + strand, within GFF4724at 86.787 kb on - strand, within GFF4724at 87.037 kb on + strand, within GFF4725at 87.037 kb on + strand, within GFF4725at 87.037 kb on + strand, within GFF4725

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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83,990 - GFF4722 0.29 -2.0
84,215 - GFF4722 0.47 -1.4
84,215 - GFF4722 0.47 -0.5
84,382 + GFF4722 0.60 -0.4
84,382 + GFF4722 0.60 -0.3
84,382 + GFF4722 0.60 -1.1
84,382 + GFF4722 0.60 +0.6
84,382 + GFF4722 0.60 +0.2
84,382 + GFF4722 0.60 -0.4
84,383 - GFF4722 0.60 -1.4
84,383 - GFF4722 0.60 -0.5
84,383 - GFF4722 0.60 +0.1
84,383 - GFF4722 0.60 +0.1
84,383 - GFF4722 0.60 -0.3
84,406 + GFF4722 0.62 -0.2
84,406 + GFF4722 0.62 -0.4
84,406 + GFF4722 0.62 -1.9
84,406 + GFF4722 0.62 -0.5
84,406 + GFF4722 0.62 -0.9
84,406 + GFF4722 0.62 -0.5
84,406 + GFF4722 0.62 -0.9
84,406 + GFF4722 0.62 -0.1
84,407 - GFF4722 0.62 +0.3
84,407 - GFF4722 0.62 -0.1
84,407 - GFF4722 0.62 -0.2
84,407 - GFF4722 0.62 -0.7
84,407 - GFF4722 0.62 -0.7
84,454 + GFF4722 0.66 -0.5
84,455 - GFF4722 0.66 -0.9
84,688 + GFF4722 0.84 -0.9
84,763 + -0.8
84,763 + -0.6
84,764 - -0.1
85,175 + GFF4723 0.22 -0.2
85,175 + GFF4723 0.22 -0.2
85,175 + GFF4723 0.22 -1.1
85,175 + GFF4723 0.22 -0.3
85,176 - GFF4723 0.22 -0.3
85,176 - GFF4723 0.22 -0.3
85,176 - GFF4723 0.22 -1.2
85,176 - GFF4723 0.22 -2.5
85,176 - GFF4723 0.22 +1.5
85,176 - GFF4723 0.22 +0.5
85,176 - GFF4723 0.22 -0.1
85,176 - GFF4723 0.22 -0.8
85,187 + GFF4723 0.23 -0.1
85,188 - GFF4723 0.23 -0.8
85,188 - GFF4723 0.23 -0.9
85,358 + GFF4723 0.38 +0.1
85,358 + GFF4723 0.38 +0.6
85,359 - GFF4723 0.38 -0.4
85,359 - GFF4723 0.38 -0.2
85,359 - GFF4723 0.38 -0.1
85,359 - GFF4723 0.38 +0.1
85,479 - GFF4723 0.49 -0.4
85,598 - GFF4723 0.59 -0.9
85,931 + GFF4723 0.89 +0.3
85,931 + GFF4723 0.89 +0.6
85,931 + GFF4723 0.89 +0.1
85,931 + GFF4723 0.89 -0.2
85,931 + GFF4723 0.89 +1.5
85,931 + GFF4723 0.89 +0.2
85,931 + GFF4723 0.89 +0.6
85,931 + GFF4723 0.89 -0.0
85,932 - GFF4723 0.89 -0.5
85,932 - GFF4723 0.89 -1.4
85,932 - GFF4723 0.89 +0.1
85,992 - -0.3
85,992 - +2.5
85,992 - -0.9
86,390 + GFF4724 0.31 -1.0
86,391 - GFF4724 0.31 +0.4
86,391 - GFF4724 0.31 -1.2
86,391 - GFF4724 0.31 +0.7
86,391 - GFF4724 0.31 -1.1
86,391 - GFF4724 0.31 +0.5
86,391 - GFF4724 0.31 +0.1
86,391 - GFF4724 0.31 -0.1
86,417 + GFF4724 0.34 -0.0
86,417 + GFF4724 0.34 +1.5
86,418 - GFF4724 0.34 -0.1
86,786 + GFF4724 0.80 +1.8
86,786 + GFF4724 0.80 +0.5
86,786 + GFF4724 0.80 -1.4
86,787 - GFF4724 0.80 +1.0
87,037 + GFF4725 0.10 -0.6
87,037 + GFF4725 0.10 -0.2
87,037 + GFF4725 0.10 -0.5

Or see this region's nucleotide sequence