Strain Fitness in Variovorax sp. SCN45 around GFF4654

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
9,530	+		GFF4653	0.47	+0.2
9,530	+		GFF4653	0.47	+0.6
9,531	-		GFF4653	0.47	-0.3
9,548	+		GFF4653	0.48	-0.1
9,548	+		GFF4653	0.48	-0.1
9,548	+		GFF4653	0.48	-0.4
9,548	+		GFF4653	0.48	+0.5
9,548	+		GFF4653	0.48	+1.2
9,549	-		GFF4653	0.48	-1.5
9,549	-		GFF4653	0.48	+0.6
9,663	-		GFF4653	0.57	+0.2
9,867	-		GFF4653	0.73	-0.4
9,867	-		GFF4653	0.73	-1.0
9,867	-		GFF4653	0.73	+0.1
10,085	+		GFF4653	0.90	+0.3
10,085	+		GFF4653	0.90	-0.6
10,085	+		GFF4653	0.90	+0.1
10,086	-		GFF4653	0.90	-0.4
10,086	-		GFF4653	0.90	-0.9
10,086	-		GFF4653	0.90	-1.7
10,100	+				-0.1
10,100	+				-1.7
10,101	-				-0.4
10,101	-				+0.1
10,101	-				-0.0
10,101	-				+2.5
10,101	-				-0.2
10,101	-				-0.0
10,350	+				-0.6
10,364	+				+1.5
10,364	+				-0.4
10,380	-				+0.1
10,380	-				-0.7
10,380	-				-0.2
10,461	+				-0.1
10,462	-				-0.4
10,462	-				-0.7
10,469	+				-1.4
10,469	+				-1.2
10,469	+				-0.9
10,469	+				-0.5
10,469	+				+0.4
10,469	+				+0.9
10,469	+				-0.1
10,469	+				-0.2
10,469	+				+1.0
10,469	+				+0.1
10,469	+				-0.0
10,470	-				-2.5
10,470	-				+0.1
10,470	-				-0.3
10,470	-				+0.4
10,470	-				+0.1
10,470	-				+0.1
10,470	-				-0.6
10,470	-				+0.3
10,470	-				-0.5
10,470	-				-0.4
10,470	-				-2.1
10,470	-				+0.1
10,489	+				-0.6
10,490	-				-0.1
10,520	+				-0.2
10,520	+				-1.5
10,520	+				-0.2
10,520	+				+0.0
10,521	-				-1.0
10,521	-				-0.0
10,521	-				-0.7
10,521	-				-0.2
10,521	-				-0.1
10,521	-				-1.2
10,521	-				-0.2
10,521	-				+0.0
10,521	-				+0.9
10,652	+				+0.2
10,653	-				-0.4
10,653	-				+0.5
10,653	-				+0.1
10,653	-				-1.1
10,754	+		GFF4654	0.13	-1.7
10,754	+		GFF4654	0.13	-0.8
10,754	+		GFF4654	0.13	+0.6
10,754	+		GFF4654	0.13	-0.5
10,754	+		GFF4654	0.13	+0.4
10,755	-		GFF4654	0.13	-0.4
10,755	-		GFF4654	0.13	+0.1
10,755	-		GFF4654	0.13	-1.5
10,755	-		GFF4654	0.13	-1.0
10,755	-		GFF4654	0.13	+0.3
10,802	+		GFF4654	0.15	+0.8
10,802	+		GFF4654	0.15	+0.1
11,168	+		GFF4654	0.31	-0.5
11,168	+		GFF4654	0.31	+0.5
11,169	-		GFF4654	0.31	+0.5
11,169	-		GFF4654	0.31	-0.2
11,169	-		GFF4654	0.31	+0.8
11,169	-		GFF4654	0.31	-0.1
11,198	+		GFF4654	0.33	-0.4
11,199	-		GFF4654	0.33	-0.1
11,417	+		GFF4654	0.43	-0.9
11,417	+		GFF4654	0.43	+0.9
11,417	+		GFF4654	0.43	-0.7
11,417	+		GFF4654	0.43	-2.0
11,417	+		GFF4654	0.43	-1.1
11,418	-		GFF4654	0.43	-0.1
11,418	-		GFF4654	0.43	+0.3
11,478	-		GFF4654	0.45	+0.5
11,478	-		GFF4654	0.45	+0.4
11,478	-		GFF4654	0.45	-0.4
11,561	+		GFF4654	0.49	+0.3
11,561	+		GFF4654	0.49	-1.5
11,561	+		GFF4654	0.49	-0.2
11,561	+		GFF4654	0.49	-0.4
11,562	-		GFF4654	0.49	+0.4
11,562	-		GFF4654	0.49	-0.2
11,562	-		GFF4654	0.49	-0.6
11,562	-		GFF4654	0.49	-1.4
11,663	+		GFF4654	0.54	+0.5
11,664	-		GFF4654	0.54	-0.0
11,825	+		GFF4654	0.61	-1.0
11,826	-		GFF4654	0.61	-0.3
11,826	-		GFF4654	0.61	+1.7
11,873	+		GFF4654	0.63	-0.3
11,873	+		GFF4654	0.63	+1.0
11,874	-		GFF4654	0.63	-1.5
11,874	-		GFF4654	0.63	+0.2
12,010	+		GFF4654	0.69	-0.3
12,038	+		GFF4654	0.71	+2.0
12,038	+		GFF4654	0.71	-0.4
12,158	+		GFF4654	0.76	-0.5
12,158	+		GFF4654	0.76	+0.2
12,158	+		GFF4654	0.76	+0.0
12,158	+		GFF4654	0.76	+1.8
12,158	+		GFF4654	0.76	-0.7
12,159	-		GFF4654	0.76	-0.2
12,159	-		GFF4654	0.76	-1.0
12,159	-		GFF4654	0.76	+0.3
12,159	-		GFF4654	0.76	-0.0
12,159	-		GFF4654	0.76	+0.0
12,161	+		GFF4654	0.76	+0.0
12,161	+		GFF4654	0.76	-0.1
12,161	+		GFF4654	0.76	-0.3
12,162	-		GFF4654	0.76	-1.2
12,162	-		GFF4654	0.76	+0.2
12,162	-		GFF4654	0.76	-0.2
12,162	-		GFF4654	0.76	-0.4
12,162	-		GFF4654	0.76	-0.8
12,275	+		GFF4654	0.81	-0.7
12,275	+		GFF4654	0.81	-0.8
12,275	+		GFF4654	0.81	-1.4
12,275	+		GFF4654	0.81	-0.3
12,275	+		GFF4654	0.81	+0.9
12,276	-		GFF4654	0.81	-0.4
12,276	-		GFF4654	0.81	-2.0
12,276	-		GFF4654	0.81	+0.0
12,276	-		GFF4654	0.81	-0.7
12,407	+		GFF4654	0.87	-1.5
12,407	+		GFF4654	0.87	-0.5
12,407	+		GFF4654	0.87	-2.1
12,407	+		GFF4654	0.87	-0.6
12,408	-		GFF4654	0.87	+1.5
12,408	-		GFF4654	0.87	-0.3
12,428	+		GFF4654	0.88	+0.9
12,428	+		GFF4654	0.88	-0.7
12,428	+		GFF4654	0.88	+0.2
12,429	-		GFF4654	0.88	-1.1
12,429	-		GFF4654	0.88	-1.0
12,429	-		GFF4654	0.88	-0.4
12,536	+				+0.0
12,536	+				+0.5
12,537	-				-0.0
12,747	+				-0.1
12,747	+				+0.1
13,107	+		GFF4655	0.52	+0.9
13,108	-		GFF4655	0.52	-1.0
13,108	-		GFF4655	0.52	+0.4
13,202	+		GFF4655	0.67	-0.2
13,203	-		GFF4655	0.68	-0.1
13,203	-		GFF4655	0.68	-1.2
13,203	-		GFF4655	0.68	+1.2
13,206	+		GFF4655	0.68	-0.4
13,206	+		GFF4655	0.68	+0.2
13,206	+		GFF4655	0.68	-0.0
13,206	+		GFF4655	0.68	-0.2
13,206	+		GFF4655	0.68	-1.1
13,207	-		GFF4655	0.68	-0.9
13,215	+		GFF4655	0.70	+0.5
13,215	+		GFF4655	0.70	-0.1
13,216	-		GFF4655	0.70	-1.1
13,424	+				-1.1
13,425	-				-0.5
13,425	-				+0.2
13,460	+				+0.3
13,460	+				-0.4
13,461	-				-0.4
13,461	-				+0.1
13,473	-				-0.4
13,499	+				+0.5
13,499	+				-1.5
13,500	-				-0.7
13,500	-				-0.4
13,500	-				+0.0
13,500	-				+2.0
13,500	-				+0.0
13,500	-				-0.4
13,500	-				+1.0
13,500	-				-1.5
13,559	+				-0.3
13,559	+				+1.1
13,559	+				-0.0
13,559	+				+1.0
13,560	-				-1.0
13,560	-				+1.5
13,586	+				+0.4
13,587	-				-0.5
13,587	-				-1.7
13,618	+				-1.2
13,618	+				-0.3
13,619	-				+0.1
13,640	+				+1.5
13,640	+				-0.4
13,640	+				-0.2
13,641	-				-0.5
13,641	-				+0.0
13,644	-				-0.7
13,644	-				-0.5
13,644	-				-0.4
13,644	-				-0.2
13,644	-				-0.1
13,644	-				-0.5
13,644	-				-0.5
13,644	-				-0.7