Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4561 and GFF4562 are separated by 5 nucleotides GFF4562 and GFF4563 are separated by 129 nucleotides GFF4563 and GFF4564 are separated by 32 nucleotides
GFF4561 - Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27), at 196,344 to 197,867
GFF4561
GFF4562 - Biotin synthase related domain containing protein, at 197,873 to 199,126
GFF4562
GFF4563 - Ferredoxin, 2Fe-2S, at 199,256 to 199,615
GFF4563
GFF4564 - hypothetical protein, at 199,648 to 200,250
GFF4564
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.158 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.557 kb on - strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.246 kb on + strand, within GFF4562 at 198.247 kb on - strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.348 kb on + strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.357 kb on + strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.648 kb on + strand, within GFF4562 at 198.708 kb on + strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.831 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 199.081 kb on - strand at 199.081 kb on - strand at 199.081 kb on - strand at 199.142 kb on + strand at 199.143 kb on - strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.153 kb on + strand at 199.154 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.190 kb on + strand at 199.191 kb on - strand at 199.241 kb on + strand at 199.242 kb on - strand at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 200.074 kb on + strand, within GFF4564 at 200.075 kb on - strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 197,053 - GFF4561 0.47 -0.0 197,053 - GFF4561 0.47 -0.5 197,053 - GFF4561 0.47 +0.4 197,158 + GFF4561 0.53 -0.2 197,224 + GFF4561 0.58 +0.2 197,224 + GFF4561 0.58 +0.0 197,224 + GFF4561 0.58 +0.1 197,224 + GFF4561 0.58 -1.0 197,224 + GFF4561 0.58 -0.1 197,225 - GFF4561 0.58 -0.8 197,225 - GFF4561 0.58 -0.6 197,227 + GFF4561 0.58 -0.8 197,227 + GFF4561 0.58 -0.3 197,227 + GFF4561 0.58 +0.6 197,227 + GFF4561 0.58 -0.2 197,227 + GFF4561 0.58 -1.2 197,228 - GFF4561 0.58 -1.2 197,228 - GFF4561 0.58 -0.2 197,228 - GFF4561 0.58 -0.3 197,228 - GFF4561 0.58 +0.2 197,557 - GFF4561 0.80 -0.1 197,593 + GFF4561 0.82 -0.4 197,593 + GFF4561 0.82 +0.3 197,593 + GFF4561 0.82 -0.2 197,593 + GFF4561 0.82 -0.0 197,593 + GFF4561 0.82 -0.5 197,593 + GFF4561 0.82 -0.0 197,594 - GFF4561 0.82 +1.0 197,594 - GFF4561 0.82 +2.2 197,594 - GFF4561 0.82 +0.0 197,594 - GFF4561 0.82 +0.8 197,594 - GFF4561 0.82 -0.5 198,219 + GFF4562 0.28 +0.4 198,219 + GFF4562 0.28 -0.4 198,219 + GFF4562 0.28 -0.6 198,219 + GFF4562 0.28 +0.2 198,220 - GFF4562 0.28 -0.0 198,220 - GFF4562 0.28 -0.7 198,220 - GFF4562 0.28 +1.5 198,220 - GFF4562 0.28 +0.7 198,246 + GFF4562 0.30 -0.2 198,247 - GFF4562 0.30 +1.0 198,327 + GFF4562 0.36 -0.1 198,327 + GFF4562 0.36 -0.3 198,327 + GFF4562 0.36 -1.0 198,327 + GFF4562 0.36 +0.8 198,327 + GFF4562 0.36 +1.8 198,327 + GFF4562 0.36 +0.9 198,327 + GFF4562 0.36 -0.4 198,328 - GFF4562 0.36 -1.5 198,328 - GFF4562 0.36 -0.8 198,328 - GFF4562 0.36 -0.7 198,328 - GFF4562 0.36 -0.3 198,330 + GFF4562 0.36 -0.3 198,330 + GFF4562 0.36 -0.3 198,330 + GFF4562 0.36 -0.5 198,330 + GFF4562 0.36 -1.2 198,330 + GFF4562 0.36 -0.4 198,330 + GFF4562 0.36 +1.2 198,330 + GFF4562 0.36 -1.8 198,330 + GFF4562 0.36 +0.4 198,330 + GFF4562 0.36 +1.2 198,330 + GFF4562 0.36 -0.8 198,330 + GFF4562 0.36 +0.6 198,331 - GFF4562 0.37 +0.5 198,331 - GFF4562 0.37 -0.4 198,331 - GFF4562 0.37 +0.5 198,331 - GFF4562 0.37 +0.7 198,331 - GFF4562 0.37 +0.1 198,331 - GFF4562 0.37 +0.8 198,348 + GFF4562 0.38 +0.8 198,349 - GFF4562 0.38 +0.8 198,349 - GFF4562 0.38 +0.6 198,357 + GFF4562 0.39 -0.6 198,358 - GFF4562 0.39 -2.1 198,358 - GFF4562 0.39 -0.4 198,648 + GFF4562 0.62 -0.8 198,708 + GFF4562 0.67 -0.4 198,709 - GFF4562 0.67 -0.4 198,709 - GFF4562 0.67 +1.2 198,709 - GFF4562 0.67 +0.4 198,709 - GFF4562 0.67 -0.4 198,709 - GFF4562 0.67 -0.4 198,709 - GFF4562 0.67 +0.4 198,709 - GFF4562 0.67 -0.0 198,831 + GFF4562 0.76 -0.1 198,912 + GFF4562 0.83 -0.8 198,912 + GFF4562 0.83 -0.4 198,913 - GFF4562 0.83 +0.2 198,913 - GFF4562 0.83 +0.1 198,913 - GFF4562 0.83 +1.8 198,913 - GFF4562 0.83 +0.2 198,924 + GFF4562 0.84 -0.2 198,924 + GFF4562 0.84 -0.2 198,924 + GFF4562 0.84 -0.2 198,925 - GFF4562 0.84 +0.3 198,925 - GFF4562 0.84 +0.5 198,925 - GFF4562 0.84 +0.5 198,925 - GFF4562 0.84 -0.2 198,925 - GFF4562 0.84 -1.8 198,984 + GFF4562 0.89 +0.1 198,984 + GFF4562 0.89 +2.8 198,984 + GFF4562 0.89 +0.6 198,984 + GFF4562 0.89 -0.8 198,984 + GFF4562 0.89 -0.0 198,985 - GFF4562 0.89 +0.3 198,985 - GFF4562 0.89 +0.1 198,985 - GFF4562 0.89 +0.3 198,985 - GFF4562 0.89 +0.0 198,985 - GFF4562 0.89 +0.8 198,985 - GFF4562 0.89 -0.9 198,985 - GFF4562 0.89 -0.6 198,985 - GFF4562 0.89 -0.2 198,985 - GFF4562 0.89 -0.2 199,081 - +0.6 199,081 - -1.0 199,081 - +0.4 199,142 + -0.5 199,143 - -0.2 199,147 + -0.2 199,147 + -1.5 199,147 + +0.1 199,148 - -0.0 199,148 - -0.1 199,148 - +0.1 199,153 + +0.3 199,154 - -0.2 199,156 - -1.0 199,156 - -0.1 199,156 - -0.7 199,190 + +0.4 199,191 - -1.0 199,241 + -0.6 199,242 - -0.1 199,394 + GFF4563 0.38 +0.4 199,394 + GFF4563 0.38 -0.1 199,394 + GFF4563 0.38 -0.1 199,394 + GFF4563 0.38 -0.7 199,394 + GFF4563 0.38 -0.1 199,394 + GFF4563 0.38 +1.8 199,394 + GFF4563 0.38 +0.8 199,394 + GFF4563 0.38 -0.3 199,395 - GFF4563 0.39 -0.0 199,395 - GFF4563 0.39 -0.0 199,395 - GFF4563 0.39 -1.0 199,395 - GFF4563 0.39 -0.2 199,395 - GFF4563 0.39 +0.4 199,395 - GFF4563 0.39 +0.6 199,395 - GFF4563 0.39 -0.8 199,395 - GFF4563 0.39 -1.6 199,395 - GFF4563 0.39 +0.8 199,395 - GFF4563 0.39 -1.0 199,395 - GFF4563 0.39 +1.5 199,395 - GFF4563 0.39 -0.1 199,400 + GFF4563 0.40 -0.6 199,400 + GFF4563 0.40 +1.8 199,400 + GFF4563 0.40 +0.8 199,400 + GFF4563 0.40 -1.7 199,400 + GFF4563 0.40 -0.4 199,400 + GFF4563 0.40 -0.6 199,400 + GFF4563 0.40 -0.8 199,401 - GFF4563 0.40 -0.9 199,401 - GFF4563 0.40 +0.2 199,401 - GFF4563 0.40 +0.5 199,401 - GFF4563 0.40 -0.8 199,401 - GFF4563 0.40 +0.1 199,401 - GFF4563 0.40 +0.3 199,401 - GFF4563 0.40 +0.1 199,401 - GFF4563 0.40 -0.0 199,401 - GFF4563 0.40 -0.4 199,401 - GFF4563 0.40 -2.0 199,768 + GFF4564 0.20 -0.4 199,768 + GFF4564 0.20 -0.2 199,768 + GFF4564 0.20 +0.2 199,768 + GFF4564 0.20 +0.4 199,769 - GFF4564 0.20 -0.5 199,769 - GFF4564 0.20 -0.2 199,769 - GFF4564 0.20 +0.0 199,769 - GFF4564 0.20 -1.4 199,769 - GFF4564 0.20 -0.1 199,769 - GFF4564 0.20 -0.2 199,769 - GFF4564 0.20 -0.2 199,769 - GFF4564 0.20 +0.6 199,972 + GFF4564 0.54 -0.2 199,972 + GFF4564 0.54 -1.4 199,972 + GFF4564 0.54 -0.4 199,972 + GFF4564 0.54 +1.0 199,972 + GFF4564 0.54 +0.6 199,972 + GFF4564 0.54 +0.0 199,972 + GFF4564 0.54 -0.2 199,973 - GFF4564 0.54 -0.4 199,973 - GFF4564 0.54 +1.0 199,973 - GFF4564 0.54 -1.1 199,973 - GFF4564 0.54 -0.0 199,973 - GFF4564 0.54 -0.3 199,973 - GFF4564 0.54 -0.0 199,973 - GFF4564 0.54 +0.2 199,973 - GFF4564 0.54 -0.3 200,074 + GFF4564 0.71 +0.1 200,075 - GFF4564 0.71 -0.2 200,116 + GFF4564 0.78 -0.6 200,116 + GFF4564 0.78 -0.1 200,116 + GFF4564 0.78 +0.6 200,116 + GFF4564 0.78 +0.8 200,116 + GFF4564 0.78 +0.4 200,116 + GFF4564 0.78 -0.3 200,116 + GFF4564 0.78 +0.3 200,116 + GFF4564 0.78 +0.5 200,116 + GFF4564 0.78 -0.4 200,116 + GFF4564 0.78 +2.8 200,116 + GFF4564 0.78 +0.8 200,117 - GFF4564 0.78 -0.6 200,117 - GFF4564 0.78 +0.7 200,117 - GFF4564 0.78 +0.2 200,117 - GFF4564 0.78 -0.2 200,117 - GFF4564 0.78 +0.4 200,117 - GFF4564 0.78 -1.1 200,117 - GFF4564 0.78 +0.5 200,117 - GFF4564 0.78 -0.9 200,117 - GFF4564 0.78 +0.8 200,117 - GFF4564 0.78 -0.5 200,117 - GFF4564 0.78 +0.5 200,117 - GFF4564 0.78 -1.2 200,117 - GFF4564 0.78 -0.0 200,117 - GFF4564 0.78 +0.0
Or see this region's nucleotide sequence