Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4540 and GFF4541 are separated by 4 nucleotides GFF4541 and GFF4542 are separated by 97 nucleotides GFF4542 and GFF4543 overlap by 4 nucleotides
GFF4540 - hypothetical protein, at 178,207 to 179,388
GFF4540
GFF4541 - Uncharacterized protein conserved in bacteria, at 179,393 to 180,772
GFF4541
GFF4542 - hypothetical protein, at 180,870 to 181,364
GFF4542
GFF4543 - no description, at 181,361 to 181,795
GFF4543
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.504 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.860 kb on - strand, within GFF4540 at 179.042 kb on + strand, within GFF4540 at 179.087 kb on + strand, within GFF4540 at 179.088 kb on - strand, within GFF4540 at 179.190 kb on - strand, within GFF4540 at 179.204 kb on + strand, within GFF4540 at 179.368 kb on + strand at 179.368 kb on + strand at 179.368 kb on + strand at 179.368 kb on + strand at 179.369 kb on - strand at 179.369 kb on - strand at 179.369 kb on - strand at 179.369 kb on - strand at 179.802 kb on + strand, within GFF4541 at 179.802 kb on + strand, within GFF4541 at 179.985 kb on + strand, within GFF4541 at 179.986 kb on - strand, within GFF4541 at 179.986 kb on - strand, within GFF4541 at 180.144 kb on + strand, within GFF4541 at 180.144 kb on + strand, within GFF4541 at 180.145 kb on - strand, within GFF4541 at 180.145 kb on - strand, within GFF4541 at 180.360 kb on + strand, within GFF4541 at 180.360 kb on + strand, within GFF4541 at 180.361 kb on - strand, within GFF4541 at 180.361 kb on - strand, within GFF4541 at 180.498 kb on + strand, within GFF4541 at 180.498 kb on + strand, within GFF4541 at 180.499 kb on - strand, within GFF4541 at 180.499 kb on - strand, within GFF4541 at 180.499 kb on - strand, within GFF4541 at 180.499 kb on - strand, within GFF4541 at 180.588 kb on + strand, within GFF4541 at 180.588 kb on + strand, within GFF4541 at 180.588 kb on + strand, within GFF4541 at 180.588 kb on + strand, within GFF4541 at 180.588 kb on + strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.589 kb on - strand, within GFF4541 at 180.871 kb on + strand at 180.871 kb on + strand at 180.872 kb on - strand at 180.872 kb on - strand at 181.384 kb on - strand at 181.758 kb on + strand at 181.758 kb on + strand at 181.759 kb on - strand at 181.759 kb on - strand at 181.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 178,504 + GFF4540 0.25 -0.1 178,799 + GFF4540 0.50 -0.0 178,799 + GFF4540 0.50 -0.4 178,799 + GFF4540 0.50 -1.8 178,799 + GFF4540 0.50 +0.3 178,799 + GFF4540 0.50 -2.0 178,799 + GFF4540 0.50 +0.2 178,800 - GFF4540 0.50 -0.2 178,800 - GFF4540 0.50 +0.0 178,800 - GFF4540 0.50 +0.9 178,800 - GFF4540 0.50 -1.6 178,860 - GFF4540 0.55 +0.4 179,042 + GFF4540 0.71 -0.9 179,087 + GFF4540 0.74 +0.2 179,088 - GFF4540 0.75 +0.2 179,190 - GFF4540 0.83 +0.5 179,204 + GFF4540 0.84 -0.2 179,368 + +0.4 179,368 + -1.1 179,368 + -0.5 179,368 + -0.6 179,369 - +1.3 179,369 - +0.9 179,369 - +0.8 179,369 - -0.1 179,802 + GFF4541 0.30 -1.4 179,802 + GFF4541 0.30 +0.5 179,985 + GFF4541 0.43 +0.6 179,986 - GFF4541 0.43 -0.8 179,986 - GFF4541 0.43 +0.4 180,144 + GFF4541 0.54 -0.0 180,144 + GFF4541 0.54 -0.5 180,145 - GFF4541 0.54 -0.6 180,145 - GFF4541 0.54 -0.6 180,360 + GFF4541 0.70 +1.2 180,360 + GFF4541 0.70 +1.0 180,361 - GFF4541 0.70 +0.0 180,361 - GFF4541 0.70 +0.2 180,498 + GFF4541 0.80 +0.3 180,498 + GFF4541 0.80 -0.3 180,499 - GFF4541 0.80 -0.5 180,499 - GFF4541 0.80 +0.3 180,499 - GFF4541 0.80 -0.0 180,499 - GFF4541 0.80 +0.6 180,588 + GFF4541 0.87 +1.8 180,588 + GFF4541 0.87 +1.1 180,588 + GFF4541 0.87 +1.5 180,588 + GFF4541 0.87 +0.8 180,588 + GFF4541 0.87 -1.5 180,589 - GFF4541 0.87 +0.2 180,589 - GFF4541 0.87 +0.5 180,589 - GFF4541 0.87 +0.0 180,589 - GFF4541 0.87 -1.8 180,589 - GFF4541 0.87 +1.6 180,589 - GFF4541 0.87 -0.8 180,589 - GFF4541 0.87 +1.2 180,589 - GFF4541 0.87 +0.0 180,589 - GFF4541 0.87 +1.0 180,589 - GFF4541 0.87 -0.0 180,589 - GFF4541 0.87 -0.4 180,589 - GFF4541 0.87 -1.6 180,871 + -0.8 180,871 + +0.9 180,872 - +0.3 180,872 - -0.3 181,384 - -0.5 181,758 + -0.4 181,758 + +0.6 181,759 - -1.0 181,759 - -0.1 181,759 - -0.9
Or see this region's nucleotide sequence