Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4499 and GFF4500 are separated by 17 nucleotides GFF4500 and GFF4501 are separated by 172 nucleotides GFF4501 and GFF4502 are separated by 29 nucleotides GFF4502 and GFF4503 overlap by 4 nucleotides
GFF4499 - Uncharacterized DUF1427 protein PA2697, at 143,908 to 144,201
GFF4499
GFF4500 - FIG002283: Isochorismatase family protein, at 144,219 to 144,872
GFF4500
GFF4501 - Transcriptional regulator, LysR family, at 145,045 to 145,956
GFF4501
GFF4502 - Putative transmembrane protein, at 145,986 to 146,726
GFF4502
GFF4503 - RNA polymerase sigma factor, at 146,723 to 147,295
GFF4503
Position (kb) 145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.149 kb on + strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.150 kb on - strand, within GFF4499 at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.191 kb on + strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.192 kb on - strand at 144.253 kb on + strand at 144.253 kb on + strand at 144.253 kb on + strand at 144.253 kb on + strand at 144.253 kb on + strand at 144.254 kb on - strand at 144.254 kb on - strand at 144.254 kb on - strand at 144.254 kb on - strand at 144.271 kb on + strand at 144.272 kb on - strand at 144.313 kb on + strand, within GFF4500 at 144.313 kb on + strand, within GFF4500 at 144.314 kb on - strand, within GFF4500 at 144.314 kb on - strand, within GFF4500 at 144.314 kb on - strand, within GFF4500 at 144.314 kb on - strand, within GFF4500 at 144.355 kb on + strand, within GFF4500 at 144.355 kb on + strand, within GFF4500 at 144.355 kb on + strand, within GFF4500 at 144.355 kb on + strand, within GFF4500 at 144.356 kb on - strand, within GFF4500 at 144.356 kb on - strand, within GFF4500 at 144.356 kb on - strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.457 kb on + strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.458 kb on - strand, within GFF4500 at 144.984 kb on + strand at 145.153 kb on + strand, within GFF4501 at 145.153 kb on + strand, within GFF4501 at 145.153 kb on + strand, within GFF4501 at 145.153 kb on + strand, within GFF4501 at 145.153 kb on + strand, within GFF4501 at 145.153 kb on + strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.154 kb on - strand, within GFF4501 at 145.319 kb on - strand, within GFF4501 at 145.988 kb on - strand at 145.988 kb on - strand at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.317 kb on + strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.318 kb on - strand, within GFF4502 at 146.498 kb on + strand, within GFF4502 at 146.498 kb on + strand, within GFF4502 at 146.498 kb on + strand, within GFF4502 at 146.499 kb on - strand, within GFF4502 at 146.499 kb on - strand, within GFF4502 at 146.499 kb on - strand, within GFF4502 at 146.499 kb on - strand, within GFF4502 at 146.668 kb on + strand at 146.668 kb on + strand at 146.669 kb on - strand at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.835 kb on + strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.836 kb on - strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.841 kb on + strand, within GFF4503 at 146.842 kb on - strand, within GFF4503 at 146.842 kb on - strand, within GFF4503 at 146.940 kb on + strand, within GFF4503 at 146.940 kb on + strand, within GFF4503 at 146.940 kb on + strand, within GFF4503 at 146.940 kb on + strand, within GFF4503 at 146.940 kb on + strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503 at 146.941 kb on - strand, within GFF4503
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 144,149 + GFF4499 0.82 -0.8 144,149 + GFF4499 0.82 -0.2 144,149 + GFF4499 0.82 +0.6 144,149 + GFF4499 0.82 +0.0 144,149 + GFF4499 0.82 -0.6 144,149 + GFF4499 0.82 +0.4 144,149 + GFF4499 0.82 -1.0 144,150 - GFF4499 0.82 -0.8 144,150 - GFF4499 0.82 +1.2 144,150 - GFF4499 0.82 -0.2 144,150 - GFF4499 0.82 -1.6 144,150 - GFF4499 0.82 -0.2 144,150 - GFF4499 0.82 -0.1 144,191 + +1.8 144,191 + -0.2 144,191 + +1.3 144,191 + +0.3 144,191 + +0.2 144,191 + +0.6 144,191 + +0.2 144,191 + -0.2 144,191 + +0.1 144,192 - -0.3 144,192 - +2.0 144,192 - -1.0 144,192 - -2.9 144,192 - -1.1 144,192 - +0.5 144,192 - -3.1 144,192 - -0.6 144,192 - -0.1 144,192 - -1.3 144,253 + +1.3 144,253 + +0.3 144,253 + +0.5 144,253 + -0.7 144,253 + -1.0 144,254 - -0.2 144,254 - -0.6 144,254 - -0.1 144,254 - -0.5 144,271 + -1.3 144,272 - +1.5 144,313 + GFF4500 0.14 -0.7 144,313 + GFF4500 0.14 -0.0 144,314 - GFF4500 0.15 -0.2 144,314 - GFF4500 0.15 +0.3 144,314 - GFF4500 0.15 -0.3 144,314 - GFF4500 0.15 +0.3 144,355 + GFF4500 0.21 -0.1 144,355 + GFF4500 0.21 -0.0 144,355 + GFF4500 0.21 -0.2 144,355 + GFF4500 0.21 -0.4 144,356 - GFF4500 0.21 -0.7 144,356 - GFF4500 0.21 +1.3 144,356 - GFF4500 0.21 -0.5 144,457 + GFF4500 0.36 -0.5 144,457 + GFF4500 0.36 +1.2 144,457 + GFF4500 0.36 -0.8 144,457 + GFF4500 0.36 -0.2 144,457 + GFF4500 0.36 +0.0 144,457 + GFF4500 0.36 -0.2 144,458 - GFF4500 0.37 +0.0 144,458 - GFF4500 0.37 -0.0 144,458 - GFF4500 0.37 -0.6 144,458 - GFF4500 0.37 +0.1 144,458 - GFF4500 0.37 +0.4 144,458 - GFF4500 0.37 -0.4 144,458 - GFF4500 0.37 -1.0 144,458 - GFF4500 0.37 +1.4 144,458 - GFF4500 0.37 -0.2 144,458 - GFF4500 0.37 +0.0 144,458 - GFF4500 0.37 +0.8 144,458 - GFF4500 0.37 +1.8 144,458 - GFF4500 0.37 +0.4 144,458 - GFF4500 0.37 -0.1 144,458 - GFF4500 0.37 +1.0 144,984 + +0.4 145,153 + GFF4501 0.12 -0.2 145,153 + GFF4501 0.12 -0.0 145,153 + GFF4501 0.12 +1.6 145,153 + GFF4501 0.12 +1.2 145,153 + GFF4501 0.12 -0.7 145,153 + GFF4501 0.12 -0.3 145,154 - GFF4501 0.12 +0.8 145,154 - GFF4501 0.12 -0.3 145,154 - GFF4501 0.12 +0.6 145,154 - GFF4501 0.12 +0.2 145,154 - GFF4501 0.12 +0.0 145,154 - GFF4501 0.12 +0.4 145,319 - GFF4501 0.30 -0.2 145,988 - -0.2 145,988 - -0.3 146,317 + GFF4502 0.45 -0.1 146,317 + GFF4502 0.45 -0.5 146,317 + GFF4502 0.45 +0.2 146,317 + GFF4502 0.45 -0.2 146,317 + GFF4502 0.45 -1.5 146,317 + GFF4502 0.45 -0.5 146,317 + GFF4502 0.45 +0.3 146,317 + GFF4502 0.45 +0.1 146,318 - GFF4502 0.45 -0.1 146,318 - GFF4502 0.45 -0.3 146,318 - GFF4502 0.45 -0.5 146,318 - GFF4502 0.45 -0.6 146,318 - GFF4502 0.45 -0.2 146,318 - GFF4502 0.45 +1.0 146,498 + GFF4502 0.69 +0.2 146,498 + GFF4502 0.69 +0.1 146,498 + GFF4502 0.69 +0.1 146,499 - GFF4502 0.69 +0.4 146,499 - GFF4502 0.69 -0.4 146,499 - GFF4502 0.69 +0.5 146,499 - GFF4502 0.69 -0.8 146,668 + -0.3 146,668 + +0.4 146,669 - -0.6 146,835 + GFF4503 0.20 -0.6 146,835 + GFF4503 0.20 -0.2 146,835 + GFF4503 0.20 -0.2 146,835 + GFF4503 0.20 -0.8 146,835 + GFF4503 0.20 +0.3 146,835 + GFF4503 0.20 -0.5 146,835 + GFF4503 0.20 -0.4 146,835 + GFF4503 0.20 +0.0 146,835 + GFF4503 0.20 -0.0 146,835 + GFF4503 0.20 +0.6 146,835 + GFF4503 0.20 +0.9 146,835 + GFF4503 0.20 -0.7 146,835 + GFF4503 0.20 -0.1 146,836 - GFF4503 0.20 -0.7 146,836 - GFF4503 0.20 +0.1 146,836 - GFF4503 0.20 -0.4 146,836 - GFF4503 0.20 -1.2 146,836 - GFF4503 0.20 +0.3 146,836 - GFF4503 0.20 -0.3 146,836 - GFF4503 0.20 -1.2 146,836 - GFF4503 0.20 -0.3 146,836 - GFF4503 0.20 +0.2 146,836 - GFF4503 0.20 -0.6 146,836 - GFF4503 0.20 -1.0 146,836 - GFF4503 0.20 -0.4 146,836 - GFF4503 0.20 -0.2 146,836 - GFF4503 0.20 -0.1 146,836 - GFF4503 0.20 +0.2 146,836 - GFF4503 0.20 +0.2 146,836 - GFF4503 0.20 +0.1 146,841 + GFF4503 0.21 -0.2 146,841 + GFF4503 0.21 -0.2 146,841 + GFF4503 0.21 +1.1 146,841 + GFF4503 0.21 -0.6 146,841 + GFF4503 0.21 -0.2 146,841 + GFF4503 0.21 +0.1 146,841 + GFF4503 0.21 -0.6 146,842 - GFF4503 0.21 -0.9 146,842 - GFF4503 0.21 -1.5 146,940 + GFF4503 0.38 -0.1 146,940 + GFF4503 0.38 -0.3 146,940 + GFF4503 0.38 +1.0 146,940 + GFF4503 0.38 +0.0 146,940 + GFF4503 0.38 +0.3 146,941 - GFF4503 0.38 +0.1 146,941 - GFF4503 0.38 -2.2 146,941 - GFF4503 0.38 +0.3 146,941 - GFF4503 0.38 -0.7 146,941 - GFF4503 0.38 +2.0 146,941 - GFF4503 0.38 -0.4 146,941 - GFF4503 0.38 +0.3
Or see this region's nucleotide sequence