Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4346 and GFF4347 are separated by 42 nucleotides GFF4347 and GFF4348 overlap by 1 nucleotides GFF4348 and GFF4349 overlap by 14 nucleotides GFF4349 and GFF4350 overlap by 4 nucleotides
GFF4346 - no description, at 269,205 to 270,071
GFF4346
GFF4347 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 270,114 to 270,986
GFF4347
GFF4348 - hypothetical protein, at 270,986 to 272,101
GFF4348
GFF4349 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 272,088 to 272,786
GFF4349
GFF4350 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 272,783 to 273,478
GFF4350
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -1
0
1 at 270.059 kb on + strand at 270.276 kb on + strand, within GFF4347 at 270.531 kb on + strand, within GFF4347 at 270.546 kb on - strand, within GFF4347 at 270.751 kb on - strand, within GFF4347 at 270.921 kb on + strand at 270.922 kb on - strand at 271.173 kb on - strand, within GFF4348 at 271.712 kb on + strand, within GFF4348 at 271.712 kb on + strand, within GFF4348 at 271.784 kb on + strand, within GFF4348 at 272.939 kb on - strand, within GFF4350
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 270,059 + +0.3 270,276 + GFF4347 0.19 +0.9 270,531 + GFF4347 0.48 +0.6 270,546 - GFF4347 0.49 +0.4 270,751 - GFF4347 0.73 -0.5 270,921 + -0.9 270,922 - +0.7 271,173 - GFF4348 0.17 +1.1 271,712 + GFF4348 0.65 +0.7 271,712 + GFF4348 0.65 +1.1 271,784 + GFF4348 0.72 +0.0 272,939 - GFF4350 0.22 -0.3
Or see this region's nucleotide sequence