Strain Fitness in Variovorax sp. SCN45 around GFF3849

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3847 and GFF3848 overlap by 8 nucleotidesGFF3848 and GFF3849 are separated by 21 nucleotidesGFF3849 and GFF3850 are separated by 1 nucleotides GFF3847 - LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24), at 47,934 to 49,046 GFF3847 GFF3848 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 49,039 to 49,710 GFF3848 GFF3849 - Iron-sulfur cluster-binding protein, Rieske family, at 49,732 to 50,100 GFF3849 GFF3850 - Periplasmic serine proteases (ClpP class), at 50,102 to 51,118 GFF3850 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.840 kb on + strand, within GFF3847at 48.841 kb on - strand, within GFF3847at 48.841 kb on - strand, within GFF3847at 48.841 kb on - strand, within GFF3847at 48.980 kb on + strandat 48.980 kb on + strandat 48.980 kb on + strandat 48.980 kb on + strandat 48.981 kb on - strandat 48.981 kb on - strandat 48.981 kb on - strandat 48.981 kb on - strandat 48.981 kb on - strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.061 kb on + strandat 49.062 kb on - strandat 49.062 kb on - strandat 49.062 kb on - strandat 49.062 kb on - strandat 49.102 kb on + strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.255 kb on + strand, within GFF3848at 49.255 kb on + strand, within GFF3848at 49.256 kb on - strand, within GFF3848at 49.256 kb on - strand, within GFF3848at 49.276 kb on + strand, within GFF3848at 49.282 kb on + strand, within GFF3848at 49.283 kb on - strand, within GFF3848at 49.283 kb on - strand, within GFF3848at 49.283 kb on - strand, within GFF3848at 49.283 kb on - strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.288 kb on + strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.289 kb on - strand, within GFF3848at 49.455 kb on + strand, within GFF3848at 49.456 kb on - strand, within GFF3848at 49.456 kb on - strand, within GFF3848at 49.456 kb on - strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.612 kb on + strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.613 kb on - strand, within GFF3848at 49.695 kb on + strandat 49.695 kb on + strandat 49.696 kb on - strandat 49.696 kb on - strandat 49.972 kb on + strand, within GFF3849at 49.972 kb on + strand, within GFF3849at 49.972 kb on + strand, within GFF3849at 49.972 kb on + strand, within GFF3849at 50.067 kb on + strandat 50.067 kb on + strandat 50.067 kb on + strandat 50.067 kb on + strandat 50.067 kb on + strandat 50.068 kb on - strandat 50.068 kb on - strandat 50.068 kb on - strandat 50.068 kb on - strandat 50.068 kb on - strandat 50.068 kb on - strandat 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.558 kb on + strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.559 kb on - strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.573 kb on + strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.574 kb on - strand, within GFF3850at 50.609 kb on + strand, within GFF3850at 50.609 kb on + strand, within GFF3850at 50.609 kb on + strand, within GFF3850at 50.609 kb on + strand, within GFF3850at 50.610 kb on - strand, within GFF3850at 50.610 kb on - strand, within GFF3850at 50.610 kb on - strand, within GFF3850at 50.610 kb on - strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.612 kb on + strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.613 kb on - strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.639 kb on + strand, within GFF3850at 50.640 kb on - strand, within GFF3850at 50.640 kb on - strand, within GFF3850at 50.640 kb on - strand, within GFF3850at 50.640 kb on - strand, within GFF3850at 50.640 kb on - strand, within GFF3850at 50.939 kb on + strand, within GFF3850at 50.972 kb on + strand, within GFF3850at 50.972 kb on + strand, within GFF3850at 50.973 kb on - strand, within GFF3850at 51.014 kb on + strand, within GFF3850at 51.014 kb on + strand, within GFF3850at 51.014 kb on + strand, within GFF3850at 51.014 kb on + strand, within GFF3850at 51.014 kb on + strand, within GFF3850at 51.015 kb on - strand, within GFF3850at 51.015 kb on - strand, within GFF3850at 51.015 kb on - strand, within GFF3850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
48,840 + GFF3847 0.81 -0.7
48,840 + GFF3847 0.81 -1.0
48,840 + GFF3847 0.81 -1.3
48,840 + GFF3847 0.81 +0.4
48,840 + GFF3847 0.81 -2.4
48,840 + GFF3847 0.81 -0.3
48,840 + GFF3847 0.81 -1.7
48,840 + GFF3847 0.81 -1.0
48,841 - GFF3847 0.81 -1.2
48,841 - GFF3847 0.81 -0.4
48,841 - GFF3847 0.81 +0.8
48,980 + -0.1
48,980 + +1.6
48,980 + -0.6
48,980 + -0.5
48,981 - -1.2
48,981 - +0.1
48,981 - +0.9
48,981 - -0.1
48,981 - -0.2
49,061 + +0.5
49,061 + +0.5
49,061 + -0.3
49,061 + +0.8
49,061 + -1.4
49,061 + +1.6
49,061 + -1.3
49,062 - -0.5
49,062 - -0.1
49,062 - +1.4
49,062 - -0.5
49,102 + +0.2
49,103 - -0.6
49,103 - +0.2
49,255 + GFF3848 0.32 +0.3
49,255 + GFF3848 0.32 -1.0
49,256 - GFF3848 0.32 +0.0
49,256 - GFF3848 0.32 -0.4
49,276 + GFF3848 0.35 -0.4
49,282 + GFF3848 0.36 -0.4
49,283 - GFF3848 0.36 -0.6
49,283 - GFF3848 0.36 -1.0
49,283 - GFF3848 0.36 -1.0
49,283 - GFF3848 0.36 -0.4
49,288 + GFF3848 0.37 -0.1
49,288 + GFF3848 0.37 +0.9
49,288 + GFF3848 0.37 -0.5
49,288 + GFF3848 0.37 -0.1
49,288 + GFF3848 0.37 -0.2
49,288 + GFF3848 0.37 +0.7
49,288 + GFF3848 0.37 +0.0
49,288 + GFF3848 0.37 -0.7
49,288 + GFF3848 0.37 -1.5
49,288 + GFF3848 0.37 -0.9
49,288 + GFF3848 0.37 -0.1
49,289 - GFF3848 0.37 +0.3
49,289 - GFF3848 0.37 +1.0
49,289 - GFF3848 0.37 +0.6
49,289 - GFF3848 0.37 -0.8
49,289 - GFF3848 0.37 -1.0
49,289 - GFF3848 0.37 -2.1
49,289 - GFF3848 0.37 -0.9
49,289 - GFF3848 0.37 -0.5
49,289 - GFF3848 0.37 +0.2
49,289 - GFF3848 0.37 +0.2
49,289 - GFF3848 0.37 +0.0
49,289 - GFF3848 0.37 -0.5
49,455 + GFF3848 0.62 -2.4
49,456 - GFF3848 0.62 +0.7
49,456 - GFF3848 0.62 -1.2
49,456 - GFF3848 0.62 +0.3
49,612 + GFF3848 0.85 +0.0
49,612 + GFF3848 0.85 -0.7
49,612 + GFF3848 0.85 +1.0
49,612 + GFF3848 0.85 +0.2
49,612 + GFF3848 0.85 -0.1
49,612 + GFF3848 0.85 -0.3
49,612 + GFF3848 0.85 +0.3
49,612 + GFF3848 0.85 -1.2
49,612 + GFF3848 0.85 +0.6
49,613 - GFF3848 0.85 +0.5
49,613 - GFF3848 0.85 -0.7
49,613 - GFF3848 0.85 -0.8
49,613 - GFF3848 0.85 -0.2
49,613 - GFF3848 0.85 -0.3
49,613 - GFF3848 0.85 +0.3
49,613 - GFF3848 0.85 +0.0
49,613 - GFF3848 0.85 -0.4
49,613 - GFF3848 0.85 +0.5
49,613 - GFF3848 0.85 -1.7
49,613 - GFF3848 0.85 -0.8
49,695 + +0.6
49,695 + -1.0
49,696 - -0.4
49,696 - -0.6
49,972 + GFF3849 0.65 -1.1
49,972 + GFF3849 0.65 -0.7
49,972 + GFF3849 0.65 -0.5
49,972 + GFF3849 0.65 -0.4
50,067 + -0.4
50,067 + -0.4
50,067 + -1.0
50,067 + +1.3
50,067 + +0.3
50,068 - +0.4
50,068 - -1.2
50,068 - -0.0
50,068 - +0.1
50,068 - -1.0
50,068 - -1.3
50,558 + GFF3850 0.45 -0.7
50,558 + GFF3850 0.45 -0.4
50,558 + GFF3850 0.45 -2.1
50,558 + GFF3850 0.45 +0.3
50,558 + GFF3850 0.45 -0.1
50,558 + GFF3850 0.45 +0.4
50,558 + GFF3850 0.45 -0.7
50,558 + GFF3850 0.45 -0.1
50,558 + GFF3850 0.45 +0.3
50,558 + GFF3850 0.45 +0.1
50,558 + GFF3850 0.45 -0.3
50,559 - GFF3850 0.45 -0.2
50,559 - GFF3850 0.45 -0.1
50,559 - GFF3850 0.45 -0.4
50,559 - GFF3850 0.45 +0.1
50,559 - GFF3850 0.45 +0.4
50,559 - GFF3850 0.45 +0.5
50,559 - GFF3850 0.45 -0.5
50,573 + GFF3850 0.46 -1.0
50,573 + GFF3850 0.46 +0.2
50,573 + GFF3850 0.46 -0.8
50,573 + GFF3850 0.46 -0.7
50,573 + GFF3850 0.46 +0.4
50,573 + GFF3850 0.46 +0.3
50,574 - GFF3850 0.46 -0.2
50,574 - GFF3850 0.46 -0.2
50,574 - GFF3850 0.46 +0.1
50,574 - GFF3850 0.46 -0.5
50,574 - GFF3850 0.46 -2.5
50,574 - GFF3850 0.46 -0.1
50,574 - GFF3850 0.46 -1.2
50,609 + GFF3850 0.50 -0.1
50,609 + GFF3850 0.50 -1.2
50,609 + GFF3850 0.50 -0.7
50,609 + GFF3850 0.50 -0.4
50,610 - GFF3850 0.50 -0.8
50,610 - GFF3850 0.50 +0.0
50,610 - GFF3850 0.50 -1.0
50,610 - GFF3850 0.50 +0.1
50,612 + GFF3850 0.50 -0.3
50,612 + GFF3850 0.50 -0.1
50,612 + GFF3850 0.50 +0.3
50,612 + GFF3850 0.50 -2.6
50,612 + GFF3850 0.50 -0.8
50,612 + GFF3850 0.50 +0.2
50,612 + GFF3850 0.50 -1.0
50,612 + GFF3850 0.50 -1.0
50,612 + GFF3850 0.50 +0.3
50,612 + GFF3850 0.50 -0.3
50,612 + GFF3850 0.50 -0.1
50,612 + GFF3850 0.50 +0.2
50,612 + GFF3850 0.50 +0.6
50,612 + GFF3850 0.50 -0.3
50,612 + GFF3850 0.50 +0.3
50,612 + GFF3850 0.50 -1.6
50,612 + GFF3850 0.50 -0.1
50,612 + GFF3850 0.50 +0.1
50,612 + GFF3850 0.50 +0.2
50,613 - GFF3850 0.50 -0.4
50,613 - GFF3850 0.50 -0.7
50,613 - GFF3850 0.50 -0.1
50,613 - GFF3850 0.50 -0.1
50,613 - GFF3850 0.50 -2.1
50,613 - GFF3850 0.50 +0.2
50,613 - GFF3850 0.50 -1.0
50,613 - GFF3850 0.50 -0.3
50,613 - GFF3850 0.50 -0.4
50,613 - GFF3850 0.50 +1.1
50,613 - GFF3850 0.50 -0.3
50,613 - GFF3850 0.50 +0.0
50,613 - GFF3850 0.50 +0.6
50,613 - GFF3850 0.50 -0.3
50,613 - GFF3850 0.50 +0.4
50,613 - GFF3850 0.50 +0.6
50,613 - GFF3850 0.50 -0.7
50,613 - GFF3850 0.50 +0.3
50,639 + GFF3850 0.53 -0.9
50,639 + GFF3850 0.53 +0.2
50,639 + GFF3850 0.53 -0.0
50,639 + GFF3850 0.53 +0.2
50,639 + GFF3850 0.53 +0.0
50,639 + GFF3850 0.53 -1.0
50,639 + GFF3850 0.53 +0.0
50,639 + GFF3850 0.53 +0.7
50,639 + GFF3850 0.53 -0.7
50,639 + GFF3850 0.53 -0.2
50,640 - GFF3850 0.53 +0.6
50,640 - GFF3850 0.53 -0.2
50,640 - GFF3850 0.53 -0.1
50,640 - GFF3850 0.53 -0.1
50,640 - GFF3850 0.53 -1.1
50,939 + GFF3850 0.82 -0.4
50,972 + GFF3850 0.86 -0.0
50,972 + GFF3850 0.86 -0.3
50,973 - GFF3850 0.86 -0.1
51,014 + GFF3850 0.90 -0.3
51,014 + GFF3850 0.90 +0.3
51,014 + GFF3850 0.90 -0.3
51,014 + GFF3850 0.90 -0.5
51,014 + GFF3850 0.90 -0.1
51,015 - GFF3850 0.90 +0.5
51,015 - GFF3850 0.90 -0.9
51,015 - GFF3850 0.90 -0.0

Or see this region's nucleotide sequence