Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3737 and GFF3738 overlap by 4 nucleotides GFF3738 and GFF3739 are separated by 29 nucleotides GFF3739 and GFF3740 are separated by 87 nucleotides GFF3740 and GFF3741 overlap by 4 nucleotides
GFF3737 - DnaA initiator-associating protein DiaA, at 233,577 to 234,221
GFF3737
GFF3738 - Uncharacterized protein YraP, at 234,218 to 235,030
GFF3738
GFF3739 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 235,060 to 235,968
GFF3739
GFF3740 - Transcriptional regulator, MerR family, at 236,056 to 236,538
GFF3740
GFF3741 - Uncharacterized MFS-type transporter, at 236,535 to 238,085
GFF3741
Position (kb) 235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.194 kb on - strand at 234.194 kb on - strand at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.719 kb on + strand, within GFF3738 at 234.720 kb on - strand, within GFF3738 at 234.720 kb on - strand, within GFF3738 at 235.061 kb on + strand at 235.127 kb on + strand at 235.128 kb on - strand at 235.841 kb on + strand, within GFF3739 at 235.841 kb on + strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.944 kb on - strand at 235.981 kb on + strand at 235.982 kb on - strand at 235.982 kb on - strand at 236.029 kb on + strand at 236.137 kb on + strand, within GFF3740 at 236.137 kb on + strand, within GFF3740 at 236.137 kb on + strand, within GFF3740 at 236.137 kb on + strand, within GFF3740 at 236.137 kb on + strand, within GFF3740 at 236.138 kb on - strand, within GFF3740 at 236.138 kb on - strand, within GFF3740 at 236.138 kb on - strand, within GFF3740 at 236.138 kb on - strand, within GFF3740 at 236.141 kb on - strand, within GFF3740 at 236.141 kb on - strand, within GFF3740 at 236.194 kb on + strand, within GFF3740 at 236.195 kb on - strand, within GFF3740 at 236.195 kb on - strand, within GFF3740 at 236.195 kb on - strand, within GFF3740 at 236.461 kb on + strand, within GFF3740 at 236.461 kb on + strand, within GFF3740 at 236.461 kb on + strand, within GFF3740 at 236.461 kb on + strand, within GFF3740 at 236.625 kb on + strand at 236.661 kb on + strand at 236.661 kb on + strand at 236.662 kb on - strand at 236.662 kb on - strand at 236.662 kb on - strand at 236.718 kb on + strand, within GFF3741 at 236.718 kb on + strand, within GFF3741 at 236.719 kb on - strand, within GFF3741 at 236.779 kb on - strand, within GFF3741 at 236.788 kb on - strand, within GFF3741 at 236.886 kb on + strand, within GFF3741 at 236.887 kb on - strand, within GFF3741
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 234,194 - +0.3 234,194 - -0.3 234,455 + GFF3738 0.29 +2.0 234,455 + GFF3738 0.29 +0.1 234,455 + GFF3738 0.29 -0.2 234,455 + GFF3738 0.29 -0.5 234,455 + GFF3738 0.29 -0.8 234,455 + GFF3738 0.29 -0.4 234,455 + GFF3738 0.29 -0.8 234,455 + GFF3738 0.29 -0.5 234,455 + GFF3738 0.29 +0.3 234,455 + GFF3738 0.29 +0.7 234,455 + GFF3738 0.29 +2.0 234,455 + GFF3738 0.29 -0.4 234,456 - GFF3738 0.29 -0.8 234,456 - GFF3738 0.29 +0.3 234,456 - GFF3738 0.29 +0.5 234,456 - GFF3738 0.29 -0.3 234,456 - GFF3738 0.29 -0.5 234,456 - GFF3738 0.29 -0.2 234,456 - GFF3738 0.29 +0.1 234,456 - GFF3738 0.29 -0.4 234,456 - GFF3738 0.29 -0.1 234,456 - GFF3738 0.29 +0.1 234,456 - GFF3738 0.29 +0.9 234,456 - GFF3738 0.29 -0.1 234,473 + GFF3738 0.31 -0.5 234,473 + GFF3738 0.31 -0.3 234,473 + GFF3738 0.31 +0.5 234,473 + GFF3738 0.31 -0.4 234,474 - GFF3738 0.31 -0.3 234,474 - GFF3738 0.31 +1.2 234,474 - GFF3738 0.31 -0.2 234,474 - GFF3738 0.31 -0.2 234,629 + GFF3738 0.51 -0.0 234,629 + GFF3738 0.51 +0.4 234,629 + GFF3738 0.51 +0.1 234,629 + GFF3738 0.51 -0.1 234,629 + GFF3738 0.51 -0.9 234,629 + GFF3738 0.51 -0.5 234,629 + GFF3738 0.51 -0.9 234,629 + GFF3738 0.51 -0.8 234,629 + GFF3738 0.51 +0.1 234,629 + GFF3738 0.51 -0.1 234,629 + GFF3738 0.51 -0.5 234,629 + GFF3738 0.51 +1.0 234,630 - GFF3738 0.51 -0.6 234,630 - GFF3738 0.51 -0.3 234,630 - GFF3738 0.51 -0.0 234,630 - GFF3738 0.51 -0.9 234,630 - GFF3738 0.51 -0.2 234,630 - GFF3738 0.51 +0.1 234,630 - GFF3738 0.51 +0.5 234,630 - GFF3738 0.51 -0.6 234,630 - GFF3738 0.51 -0.5 234,630 - GFF3738 0.51 -0.5 234,630 - GFF3738 0.51 +0.8 234,630 - GFF3738 0.51 +0.5 234,630 - GFF3738 0.51 -0.7 234,630 - GFF3738 0.51 -0.8 234,630 - GFF3738 0.51 -0.6 234,630 - GFF3738 0.51 -0.1 234,719 + GFF3738 0.62 -0.5 234,720 - GFF3738 0.62 +0.1 234,720 - GFF3738 0.62 -1.4 235,061 + +0.8 235,127 + -0.2 235,128 - -0.6 235,841 + GFF3739 0.86 -0.2 235,841 + GFF3739 0.86 -1.5 235,842 - GFF3739 0.86 -0.4 235,842 - GFF3739 0.86 +0.2 235,842 - GFF3739 0.86 -0.3 235,842 - GFF3739 0.86 +0.4 235,944 - -0.6 235,981 + -1.3 235,982 - -0.7 235,982 - -0.0 236,029 + -0.2 236,137 + GFF3740 0.17 +0.0 236,137 + GFF3740 0.17 +1.8 236,137 + GFF3740 0.17 -0.3 236,137 + GFF3740 0.17 +0.2 236,137 + GFF3740 0.17 -0.3 236,138 - GFF3740 0.17 +1.5 236,138 - GFF3740 0.17 +0.2 236,138 - GFF3740 0.17 -0.2 236,138 - GFF3740 0.17 -0.6 236,141 - GFF3740 0.18 -0.9 236,141 - GFF3740 0.18 +1.3 236,194 + GFF3740 0.29 +0.1 236,195 - GFF3740 0.29 -0.1 236,195 - GFF3740 0.29 -0.1 236,195 - GFF3740 0.29 +0.7 236,461 + GFF3740 0.84 -0.1 236,461 + GFF3740 0.84 -2.2 236,461 + GFF3740 0.84 -0.3 236,461 + GFF3740 0.84 -1.8 236,625 + -0.3 236,661 + +0.5 236,661 + +0.3 236,662 - -0.5 236,662 - +0.9 236,662 - +0.5 236,718 + GFF3741 0.12 -0.2 236,718 + GFF3741 0.12 +0.2 236,719 - GFF3741 0.12 +0.8 236,779 - GFF3741 0.16 +0.8 236,788 - GFF3741 0.16 -0.9 236,886 + GFF3741 0.23 -0.0 236,887 - GFF3741 0.23 +0.2
Or see this region's nucleotide sequence