Strain Fitness in Variovorax sp. SCN45 around GFF3595

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
107,022	+				+0.2
107,022	+				-0.1
107,022	+				+0.1
107,022	+				-0.1
107,023	-				+0.4
107,023	-				+0.8
107,023	-				-0.2
107,023	-				+0.5
107,023	-				+0.5
107,040	+				+0.2
107,041	-				+1.2
107,041	-				-0.8
107,041	-				-1.7
107,041	-				+0.8
107,041	-				-0.5
107,071	+				-0.2
107,071	+				-0.3
107,071	+				+0.2
107,072	-				-0.1
107,072	-				+0.5
107,072	-				-2.3
107,072	-				-0.2
107,092	+				+0.1
107,093	-				+0.2
107,110	+				-0.0
107,110	+				-0.5
107,244	+		GFF3594	0.23	-0.7
107,244	+		GFF3594	0.23	+1.8
107,244	+		GFF3594	0.23	+1.1
107,244	+		GFF3594	0.23	-0.4
107,244	+		GFF3594	0.23	-0.1
107,245	-		GFF3594	0.23	-0.6
107,245	-		GFF3594	0.23	-0.4
107,245	-		GFF3594	0.23	-0.6
107,245	-		GFF3594	0.23	+0.3
107,245	-		GFF3594	0.23	+1.6
107,309	+		GFF3594	0.39	-1.1
107,309	+		GFF3594	0.39	+0.3
107,309	+		GFF3594	0.39	+0.1
107,309	+		GFF3594	0.39	-0.2
107,309	+		GFF3594	0.39	-1.4
107,309	+		GFF3594	0.39	-1.7
107,309	+		GFF3594	0.39	-0.1
107,309	+		GFF3594	0.39	-0.5
107,309	+		GFF3594	0.39	+0.6
107,309	+		GFF3594	0.39	+1.0
107,309	+		GFF3594	0.39	-0.3
107,309	+		GFF3594	0.39	+2.4
107,309	+		GFF3594	0.39	+1.3
107,309	+		GFF3594	0.39	+0.5
107,309	+		GFF3594	0.39	+0.9
107,309	+		GFF3594	0.39	-1.2
107,309	+		GFF3594	0.39	-0.0
107,309	+		GFF3594	0.39	+0.1
107,309	+		GFF3594	0.39	-0.4
107,310	-		GFF3594	0.39	+0.3
107,310	-		GFF3594	0.39	+0.2
107,310	-		GFF3594	0.39	-0.1
107,310	-		GFF3594	0.39	-0.1
107,310	-		GFF3594	0.39	-0.8
107,310	-		GFF3594	0.39	-0.5
107,310	-		GFF3594	0.39	+2.4
107,310	-		GFF3594	0.39	+0.6
107,310	-		GFF3594	0.39	-0.8
107,310	-		GFF3594	0.39	+0.2
107,310	-		GFF3594	0.39	+0.1
107,310	-		GFF3594	0.39	+1.2
107,310	-		GFF3594	0.39	-1.4
107,310	-		GFF3594	0.39	-0.2
107,340	+		GFF3594	0.46	+1.8
107,341	-		GFF3594	0.47	-0.8
107,457	+		GFF3594	0.75	+0.8
107,458	-		GFF3594	0.75	+1.0
107,458	-		GFF3594	0.75	-0.4
107,458	-		GFF3594	0.75	-0.2
107,493	+		GFF3594	0.83	+0.2
107,493	+		GFF3594	0.83	-0.2
107,493	+		GFF3594	0.83	-1.1
107,493	+		GFF3594	0.83	+0.4
107,494	-		GFF3594	0.84	+0.4
107,494	-		GFF3594	0.84	+0.2
107,539	+				-0.7
107,539	+				+0.5
107,539	+				-0.0
107,539	+				-0.5
107,539	+				-0.0
107,539	+				-0.9
107,539	+				-0.2
107,540	-				+0.8
107,540	-				-1.7
107,540	-				-0.5
107,581	+				+0.0
107,581	+				-0.1
107,581	+				+0.8
107,581	+				-0.2
107,582	-				-0.5
107,610	+				-0.6
107,610	+				+1.0
107,610	+				+1.1
107,610	+				-1.5
107,610	+				-0.6
107,611	-				-0.5
107,611	-				-0.8
107,611	-				+0.2
107,611	-				-1.6
107,611	-				-1.0
107,611	-				-0.5
107,611	-				-0.1
107,611	-				-0.5
107,611	-				+0.8
107,611	-				-1.2
107,707	-				+0.6
107,707	-				-0.5
107,707	-				+1.4
107,709	+				-1.1
107,709	+				+0.4
107,709	+				-1.5
107,709	+				-0.4
107,709	+				+0.1
107,709	+				-0.4
107,709	+				+0.2
107,710	-				+0.8
107,710	-				-0.1
107,710	-				+1.8
107,710	-				-0.4
107,710	-				-0.1
107,710	-				-0.1
107,710	-				-0.2
107,710	-				-0.2
107,710	-				-0.1
107,710	-				-1.2
107,710	-				+0.4
107,710	-				+0.7
107,710	-				+0.0
107,751	+				+0.0
107,766	+				-0.6
107,766	+				+0.1
107,766	+				-0.9
107,766	+				-0.1
107,767	-				+1.2
107,771	+				-0.7
107,771	+				-0.8
107,771	+				+0.1
107,771	+				+0.8
107,771	+				+0.2
107,771	+				-0.5
107,772	-				-0.2
107,772	-				-0.4
107,772	-				-1.2
107,823	-				-0.1
107,928	+				+0.8
107,928	+				+1.8
107,928	+				+0.6
107,928	+				+0.2
107,929	-				-2.4
107,976	+				-1.2
108,158	+		GFF3595	0.20	-0.5
108,158	+		GFF3595	0.20	-0.4
108,158	+		GFF3595	0.20	-0.0
108,159	-		GFF3595	0.21	+1.0
108,159	-		GFF3595	0.21	-0.6
108,204	+		GFF3595	0.27	-0.3
108,204	+		GFF3595	0.27	-0.4
108,204	+		GFF3595	0.27	-1.1
108,204	+		GFF3595	0.27	+0.1
108,204	+		GFF3595	0.27	-0.8
108,205	-		GFF3595	0.27	+0.5
108,205	-		GFF3595	0.27	-0.7
108,205	-		GFF3595	0.27	-0.4
108,219	-		GFF3595	0.29	-0.7
108,219	-		GFF3595	0.29	-0.6
108,219	-		GFF3595	0.29	-0.1
108,219	-		GFF3595	0.29	-0.7
108,262	+		GFF3595	0.35	+0.2
108,262	+		GFF3595	0.35	-0.7
108,262	+		GFF3595	0.35	+0.5
108,262	+		GFF3595	0.35	-0.8
108,263	-		GFF3595	0.35	-0.3
108,263	-		GFF3595	0.35	+1.0
108,263	-		GFF3595	0.35	-0.5
108,263	-		GFF3595	0.35	+0.2
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	-1.6
108,314	+		GFF3595	0.43	-0.5
108,314	+		GFF3595	0.43	-1.8
108,314	+		GFF3595	0.43	-0.4
108,314	+		GFF3595	0.43	-0.7
108,314	+		GFF3595	0.43	-0.4
108,314	+		GFF3595	0.43	-0.0
108,314	+		GFF3595	0.43	-0.9
108,314	+		GFF3595	0.43	-0.9
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	+0.8
108,314	+		GFF3595	0.43	-1.3
108,314	+		GFF3595	0.43	+0.6
108,315	-		GFF3595	0.43	-0.1
108,315	-		GFF3595	0.43	-0.4
108,315	-		GFF3595	0.43	-0.5
108,315	-		GFF3595	0.43	-0.1
108,315	-		GFF3595	0.43	+0.8
108,315	-		GFF3595	0.43	-0.8
108,315	-		GFF3595	0.43	+0.4
108,315	-		GFF3595	0.43	+0.1
108,315	-		GFF3595	0.43	-1.4
108,315	-		GFF3595	0.43	+0.1
108,315	-		GFF3595	0.43	+0.6
108,315	-		GFF3595	0.43	-0.1
108,331	-		GFF3595	0.45	+1.2
108,334	+		GFF3595	0.45	-1.5
108,334	+		GFF3595	0.45	+0.6
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	+0.0
108,334	+		GFF3595	0.45	+1.2
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	-1.2
108,334	+		GFF3595	0.45	-0.4
108,334	+		GFF3595	0.45	-1.0
108,334	+		GFF3595	0.45	-0.2
108,334	+		GFF3595	0.45	+0.0
108,334	+		GFF3595	0.45	-0.3
108,335	-		GFF3595	0.45	-0.2
108,335	-		GFF3595	0.45	-0.9
108,335	-		GFF3595	0.45	-0.7
108,335	-		GFF3595	0.45	+0.0
108,335	-		GFF3595	0.45	-0.3
108,373	+		GFF3595	0.51	-0.8
108,373	+		GFF3595	0.51	-1.5
108,373	+		GFF3595	0.51	+0.2
108,373	+		GFF3595	0.51	-0.2
108,373	+		GFF3595	0.51	-0.2
108,373	+		GFF3595	0.51	+0.1
108,373	+		GFF3595	0.51	-0.8
108,373	+		GFF3595	0.51	-1.5
108,373	+		GFF3595	0.51	-0.5
108,374	-		GFF3595	0.51	-0.6
108,374	-		GFF3595	0.51	-1.2
108,374	-		GFF3595	0.51	+0.3
108,374	-		GFF3595	0.51	-0.1
108,374	-		GFF3595	0.51	+0.6
108,374	-		GFF3595	0.51	-0.2
108,374	-		GFF3595	0.51	-0.1
108,472	+		GFF3595	0.65	+0.9
108,473	-		GFF3595	0.65	+0.1
108,540	-		GFF3595	0.74	-0.3
108,540	-		GFF3595	0.74	-0.6
108,560	-		GFF3595	0.77	-0.5
108,596	+		GFF3595	0.82	-0.1
108,609	-		GFF3595	0.84	-0.4
108,609	-		GFF3595	0.84	-0.3
108,638	-		GFF3595	0.88	+1.3
108,736	+				-1.0
108,736	+				+0.0
108,777	+				-0.2
108,777	+				+0.4
108,778	-				+1.0
108,778	-				-0.7
108,784	+				+1.3
108,784	+				-0.7
108,785	-				+1.1
108,785	-				-0.3
108,820	+				+0.2
108,820	+				-0.2
108,820	+				-0.4
108,821	-				-1.1
108,822	+				-0.2
108,823	-				-1.1
108,823	-				+0.0
108,880	+				+0.4
108,880	+				+1.2
108,880	+				-0.0
108,880	+				-1.9
108,881	-				-0.1
108,881	-				-0.6
108,881	-				-0.4
108,881	-				+0.3
108,881	-				-1.0
108,881	-				-0.5
108,908	-				+1.5
108,934	+				-0.3
108,934	+				-0.5
108,934	+				+0.1
108,934	+				-0.7
108,934	+				-0.8
108,934	+				-0.4
108,935	-				+0.1
108,935	-				-0.3
108,940	+				-0.1
108,940	+				+0.8
108,940	+				-0.9
108,940	+				-0.4
108,940	+				+2.8
108,940	+				-1.2
108,940	+				-0.8
108,941	-				+0.1
108,941	-				+0.2
108,982	+				-0.2
108,982	+				-0.7
108,982	+				-1.2
108,982	+				-0.3
108,982	+				-0.8
108,982	+				-0.7
108,982	+				-0.1
108,982	+				-0.3
108,982	+				-0.3
108,982	+				-1.0
108,982	+				-0.2
108,982	+				-0.1
108,982	+				+0.1
108,982	+				-0.5
108,982	+				-0.3
108,982	+				+0.2
108,982	+				+0.1
108,982	+				-0.0
108,982	+				+0.8
108,982	+				-0.2
108,982	+				-0.2
108,982	+				-0.4
108,982	+				+0.3
108,982	+				-0.8
108,982	+				-1.0
108,982	+				-1.2
108,982	+				+0.1
108,982	+				+0.2
108,982	+				-0.1
108,982	+				-0.3
108,982	+				-1.1
108,982	+				+0.5
108,982	+				+0.4
108,982	+				-0.3
108,983	-				+0.2
108,983	-				-1.0
108,983	-				-0.2
108,983	-				+0.4
108,983	-				-0.6
108,983	-				-0.1
108,983	-				-0.1
108,983	-				-0.7
108,983	-				+0.0
108,983	-				-0.2
108,983	-				-1.0
108,983	-				+0.3
108,983	-				-0.0
108,983	-				-1.2
108,983	-				-0.2
108,983	-				-0.2
108,983	-				-0.3
108,983	-				+0.1
108,983	-				-0.7
108,983	-				+1.2
108,983	-				-1.8
108,983	-				-0.4
108,983	-				-0.0
108,983	-				-0.2
108,983	-				-0.6
108,983	-				+0.2
109,081	+				-0.1
109,081	+				-0.2
109,081	+				-0.0
109,081	+				-0.4
109,081	+				-0.4
109,081	+				-0.5
109,081	+				+0.3
109,081	+				-0.8
109,081	+				-0.0
109,082	-				+0.8
109,082	-				+0.4
109,082	-				+0.2
109,082	-				-0.2
109,082	-				-1.9
109,082	-				-0.3
109,082	-				+0.8
109,082	-				+0.0
109,082	-				-1.0
109,082	-				-0.2
109,082	-				-0.1
109,624	+		GFF3596	0.37	+0.4
109,624	+		GFF3596	0.37	-0.3
109,624	+		GFF3596	0.37	+0.2
109,624	+		GFF3596	0.37	+0.4
109,624	+		GFF3596	0.37	+0.2
109,624	+		GFF3596	0.37	+1.0
109,624	+		GFF3596	0.37	-0.4
109,624	+		GFF3596	0.37	-0.8
109,624	+		GFF3596	0.37	-1.5
109,624	+		GFF3596	0.37	-1.1
109,624	+		GFF3596	0.37	+0.6
109,625	-		GFF3596	0.37	-0.5
109,625	-		GFF3596	0.37	+0.1
109,625	-		GFF3596	0.37	+0.0
109,625	-		GFF3596	0.37	+0.8
109,625	-		GFF3596	0.37	-0.7
109,625	-		GFF3596	0.37	+0.3
109,625	-		GFF3596	0.37	-1.1
109,625	-		GFF3596	0.37	-0.2
109,625	-		GFF3596	0.37	-0.4
109,625	-		GFF3596	0.37	+0.2
109,625	-		GFF3596	0.37	-0.9