Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3575 and GFF3576 overlap by 4 nucleotides GFF3576 and GFF3577 overlap by 4 nucleotides GFF3577 and GFF3578 are separated by 116 nucleotides GFF3578 and GFF3579 overlap by 4 nucleotides
GFF3575 - no description, at 87,230 to 87,916
GFF3575
GFF3576 - no description, at 87,913 to 88,554
GFF3576
GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441
GFF3577
GFF3578 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 89,558 to 90,217
GFF3578
GFF3579 - probable iron-sulfur binding protein YPO1417, at 90,214 to 91,203
GFF3579
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1
2 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 88.074 kb on + strand, within GFF3576 at 88.074 kb on + strand, within GFF3576 at 88.075 kb on - strand, within GFF3576 at 88.240 kb on + strand, within GFF3576 at 88.241 kb on - strand, within GFF3576 at 88.633 kb on + strand at 88.633 kb on + strand at 88.633 kb on + strand at 88.634 kb on - strand at 88.720 kb on + strand, within GFF3577 at 88.720 kb on + strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.930 kb on + strand, within GFF3577 at 88.931 kb on - strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.603 kb on + strand at 89.604 kb on - strand at 89.805 kb on - strand, within GFF3578 at 89.819 kb on + strand, within GFF3578 at 89.912 kb on + strand, within GFF3578 at 90.075 kb on - strand, within GFF3578 at 90.080 kb on + strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.351 kb on - strand, within GFF3579
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 87,722 + GFF3575 0.72 -0.2 87,722 + GFF3575 0.72 -1.0 87,722 + GFF3575 0.72 -0.1 87,723 - GFF3575 0.72 -0.6 87,723 - GFF3575 0.72 -0.2 87,723 - GFF3575 0.72 +2.1 88,074 + GFF3576 0.25 +1.1 88,074 + GFF3576 0.25 -1.0 88,075 - GFF3576 0.25 -1.4 88,240 + GFF3576 0.51 -0.1 88,241 - GFF3576 0.51 -1.1 88,633 + -0.2 88,633 + +0.3 88,633 + -0.0 88,634 - -0.1 88,720 + GFF3577 0.19 -0.0 88,720 + GFF3577 0.19 -0.5 88,721 - GFF3577 0.19 -0.3 88,721 - GFF3577 0.19 +0.8 88,930 + GFF3577 0.43 -0.9 88,931 - GFF3577 0.43 -1.3 89,089 + GFF3577 0.60 -1.5 89,089 + GFF3577 0.60 -0.7 89,125 + GFF3577 0.64 -1.2 89,125 + GFF3577 0.64 -0.3 89,125 + GFF3577 0.64 -1.5 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 -1.3 89,125 + GFF3577 0.64 -1.5 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 -1.4 89,125 + GFF3577 0.64 -0.2 89,125 + GFF3577 0.64 -0.6 89,125 + GFF3577 0.64 -0.6 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 -0.5 89,125 + GFF3577 0.64 -1.3 89,126 - GFF3577 0.65 -0.6 89,126 - GFF3577 0.65 -0.0 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 +0.4 89,126 - GFF3577 0.65 +0.5 89,126 - GFF3577 0.65 +0.5 89,126 - GFF3577 0.65 -0.4 89,126 - GFF3577 0.65 +0.1 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 +0.2 89,126 - GFF3577 0.65 -0.6 89,126 - GFF3577 0.65 -0.5 89,126 - GFF3577 0.65 +0.3 89,248 + GFF3577 0.78 +0.4 89,248 + GFF3577 0.78 +0.3 89,603 + +0.6 89,604 - -0.8 89,805 - GFF3578 0.37 -0.2 89,819 + GFF3578 0.40 -0.4 89,912 + GFF3578 0.54 -0.1 90,075 - GFF3578 0.78 +0.2 90,080 + GFF3578 0.79 -0.2 90,081 - GFF3578 0.79 +0.3 90,081 - GFF3578 0.79 -0.5 90,081 - GFF3578 0.79 -0.0 90,081 - GFF3578 0.79 +0.0 90,081 - GFF3578 0.79 -0.5 90,081 - GFF3578 0.79 -0.3 90,351 - GFF3579 0.14 +0.8
Or see this region's nucleotide sequence