Strain Fitness in Variovorax sp. SCN45 around GFF3540

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3538 and GFF3539 are separated by 13 nucleotidesGFF3539 and GFF3540 are separated by 131 nucleotidesGFF3540 and GFF3541 overlap by 1 nucleotidesGFF3541 and GFF3542 overlap by 4 nucleotides GFF3538 - Ferric iron ABC transporter, iron-binding protein, at 44,176 to 45,210 GFF3538 GFF3539 - Probable ALANIN-rich signal peptide protein, at 45,224 to 45,721 GFF3539 GFF3540 - hypothetical protein, at 45,853 to 46,515 GFF3540 GFF3541 - hypothetical protein, at 46,515 to 47,342 GFF3541 GFF3542 - hypothetical protein, at 47,339 to 47,851 GFF3542 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.884 kb on + strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.933 kb on - strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.993 kb on - strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.225 kb on + strandat 45.226 kb on - strandat 45.226 kb on - strandat 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.312 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.764 kb on + strandat 45.764 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.923 kb on + strand, within GFF3540at 45.923 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.585 kb on + strandat 46.586 kb on - strandat 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.927 kb on + strand, within GFF3541at 47.102 kb on - strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.354 kb on + strandat 47.354 kb on + strandat 47.354 kb on + strandat 47.355 kb on - strandat 47.355 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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44,884 + GFF3538 0.68 -1.4
44,884 + GFF3538 0.68 +0.7
44,933 - GFF3538 0.73 +0.3
44,992 + GFF3538 0.79 -0.1
44,992 + GFF3538 0.79 +0.1
44,993 - GFF3538 0.79 +0.3
44,995 + GFF3538 0.79 -0.8
44,995 + GFF3538 0.79 -1.2
44,995 + GFF3538 0.79 +1.1
44,995 + GFF3538 0.79 -0.2
44,996 - GFF3538 0.79 +0.8
44,996 - GFF3538 0.79 -0.8
44,996 - GFF3538 0.79 -0.3
44,996 - GFF3538 0.79 +0.9
44,996 - GFF3538 0.79 -0.2
44,996 - GFF3538 0.79 +1.8
44,996 - GFF3538 0.79 +0.0
45,124 + -0.8
45,124 + +1.4
45,124 + +1.4
45,124 + -0.8
45,139 + -1.4
45,139 + +0.7
45,139 + +0.2
45,139 + -0.8
45,140 - -0.8
45,140 - +0.8
45,140 - -0.5
45,225 + -0.8
45,226 - +0.3
45,226 - +0.3
45,288 + GFF3539 0.13 +0.8
45,288 + GFF3539 0.13 -0.3
45,288 + GFF3539 0.13 -0.3
45,289 - GFF3539 0.13 -0.5
45,289 - GFF3539 0.13 -0.4
45,289 - GFF3539 0.13 -0.8
45,289 - GFF3539 0.13 +3.4
45,312 + GFF3539 0.18 +0.3
45,315 + GFF3539 0.18 +0.3
45,315 + GFF3539 0.18 -1.8
45,315 + GFF3539 0.18 -0.5
45,336 + GFF3539 0.22 -0.0
45,336 + GFF3539 0.22 -0.1
45,337 - GFF3539 0.23 -1.0
45,337 - GFF3539 0.23 -0.0
45,337 - GFF3539 0.23 -0.5
45,337 - GFF3539 0.23 -0.5
45,337 - GFF3539 0.23 +0.1
45,337 - GFF3539 0.23 -0.6
45,467 + GFF3539 0.49 -0.8
45,467 + GFF3539 0.49 -0.6
45,467 + GFF3539 0.49 +0.6
45,467 + GFF3539 0.49 -0.5
45,467 + GFF3539 0.49 +0.2
45,467 + GFF3539 0.49 -0.1
45,468 - GFF3539 0.49 -0.6
45,468 - GFF3539 0.49 -0.8
45,468 - GFF3539 0.49 -0.0
45,468 - GFF3539 0.49 +2.6
45,594 + GFF3539 0.74 +0.1
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 -0.5
45,594 + GFF3539 0.74 -0.4
45,594 + GFF3539 0.74 -0.6
45,594 + GFF3539 0.74 +0.3
45,594 + GFF3539 0.74 -0.3
45,594 + GFF3539 0.74 -0.1
45,594 + GFF3539 0.74 +0.4
45,594 + GFF3539 0.74 -0.5
45,594 + GFF3539 0.74 -0.4
45,595 - GFF3539 0.74 -1.2
45,595 - GFF3539 0.74 -0.9
45,595 - GFF3539 0.74 +0.3
45,595 - GFF3539 0.74 -0.2
45,595 - GFF3539 0.74 -0.8
45,595 - GFF3539 0.74 -1.4
45,595 - GFF3539 0.74 -0.6
45,595 - GFF3539 0.74 -0.7
45,595 - GFF3539 0.74 +1.8
45,595 - GFF3539 0.74 +0.2
45,764 + -0.7
45,764 + +0.3
45,823 + -0.6
45,823 + +0.1
45,823 + -0.5
45,823 + -0.9
45,824 - +0.5
45,824 - -2.4
45,824 - -0.5
45,890 + +0.4
45,890 + -0.3
45,890 + -0.2
45,891 - -0.5
45,891 - +1.0
45,891 - -0.3
45,891 - -1.3
45,923 + GFF3540 0.11 -0.1
45,923 + GFF3540 0.11 -0.2
46,260 + GFF3540 0.61 -0.6
46,260 + GFF3540 0.61 -0.8
46,260 + GFF3540 0.61 -0.4
46,585 + -0.5
46,586 - -1.2
46,774 + GFF3541 0.31 -0.7
46,774 + GFF3541 0.31 -0.7
46,774 + GFF3541 0.31 +0.1
46,774 + GFF3541 0.31 +0.6
46,774 + GFF3541 0.31 +0.2
46,774 + GFF3541 0.31 -0.1
46,775 - GFF3541 0.31 +0.4
46,775 - GFF3541 0.31 -0.4
46,775 - GFF3541 0.31 -0.3
46,775 - GFF3541 0.31 +1.4
46,775 - GFF3541 0.31 -0.0
46,775 - GFF3541 0.31 +0.8
46,775 - GFF3541 0.31 -1.0
46,855 + GFF3541 0.41 -0.6
46,855 + GFF3541 0.41 -1.4
46,855 + GFF3541 0.41 -1.5
46,855 + GFF3541 0.41 -0.5
46,855 + GFF3541 0.41 -0.1
46,855 + GFF3541 0.41 +0.6
46,855 + GFF3541 0.41 +0.3
46,855 + GFF3541 0.41 +0.5
46,855 + GFF3541 0.41 +1.2
46,855 + GFF3541 0.41 -1.5
46,855 + GFF3541 0.41 -0.2
46,855 + GFF3541 0.41 -0.4
46,855 + GFF3541 0.41 -0.0
46,855 + GFF3541 0.41 -0.7
46,856 - GFF3541 0.41 +0.2
46,856 - GFF3541 0.41 -0.5
46,856 - GFF3541 0.41 -0.1
46,856 - GFF3541 0.41 -0.0
46,856 - GFF3541 0.41 +0.5
46,856 - GFF3541 0.41 -0.1
46,856 - GFF3541 0.41 +0.5
46,856 - GFF3541 0.41 -0.2
46,856 - GFF3541 0.41 -0.3
46,927 + GFF3541 0.50 -1.4
47,102 - GFF3541 0.71 -0.2
47,125 + GFF3541 0.74 -0.0
47,125 + GFF3541 0.74 -0.3
47,125 + GFF3541 0.74 -2.3
47,125 + GFF3541 0.74 -1.7
47,126 - GFF3541 0.74 -0.3
47,126 - GFF3541 0.74 -0.9
47,354 + +0.3
47,354 + +0.0
47,354 + +1.1
47,355 - +0.1
47,355 - -0.1
47,365 - +1.4
47,365 - -0.4
47,365 - -0.7

Or see this region's nucleotide sequence