Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3524 and GFF3525 are separated by 86 nucleotides GFF3525 and GFF3526 overlap by 4 nucleotides GFF3526 and GFF3527 overlap by 4 nucleotides
GFF3524 - Possible NADH oxidoreductase, at 30,358 to 31,494
GFF3524
GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117
GFF3525
GFF3526 - hypothetical protein, at 32,114 to 32,608
GFF3526
GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750
GFF3527
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.648 kb on - strand, within GFF3524 at 30.653 kb on + strand, within GFF3524 at 30.653 kb on + strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.654 kb on - strand, within GFF3524 at 30.681 kb on - strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.689 kb on + strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.690 kb on - strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.848 kb on + strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.849 kb on - strand, within GFF3524 at 30.900 kb on + strand, within GFF3524 at 31.115 kb on + strand, within GFF3524 at 31.125 kb on - strand, within GFF3524 at 31.125 kb on - strand, within GFF3524 at 31.549 kb on - strand at 31.549 kb on - strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.550 kb on + strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.551 kb on - strand at 31.654 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.753 kb on + strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 32.409 kb on + strand, within GFF3526 at 32.410 kb on - strand, within GFF3526 at 32.416 kb on - strand, within GFF3526 at 32.563 kb on - strand at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.990 kb on + strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 30,648 - GFF3524 0.26 -0.4 30,648 - GFF3524 0.26 -0.6 30,648 - GFF3524 0.26 -1.5 30,648 - GFF3524 0.26 -0.2 30,648 - GFF3524 0.26 -0.9 30,653 + GFF3524 0.26 -1.2 30,653 + GFF3524 0.26 -2.0 30,654 - GFF3524 0.26 -0.2 30,654 - GFF3524 0.26 +0.2 30,654 - GFF3524 0.26 -0.5 30,654 - GFF3524 0.26 +0.8 30,654 - GFF3524 0.26 +0.3 30,681 - GFF3524 0.28 -1.0 30,689 + GFF3524 0.29 +2.5 30,689 + GFF3524 0.29 -1.1 30,689 + GFF3524 0.29 -0.1 30,690 - GFF3524 0.29 +0.1 30,690 - GFF3524 0.29 -0.1 30,690 - GFF3524 0.29 +0.8 30,690 - GFF3524 0.29 -0.3 30,690 - GFF3524 0.29 -0.9 30,848 + GFF3524 0.43 -0.6 30,848 + GFF3524 0.43 +0.2 30,848 + GFF3524 0.43 +0.5 30,848 + GFF3524 0.43 -0.3 30,848 + GFF3524 0.43 +0.2 30,848 + GFF3524 0.43 +0.2 30,848 + GFF3524 0.43 -0.0 30,848 + GFF3524 0.43 -0.2 30,848 + GFF3524 0.43 -1.0 30,848 + GFF3524 0.43 +0.9 30,848 + GFF3524 0.43 +0.8 30,849 - GFF3524 0.43 -0.6 30,849 - GFF3524 0.43 -0.4 30,849 - GFF3524 0.43 -0.7 30,849 - GFF3524 0.43 +0.5 30,849 - GFF3524 0.43 -0.1 30,849 - GFF3524 0.43 -0.3 30,849 - GFF3524 0.43 -1.1 30,900 + GFF3524 0.48 +0.6 31,115 + GFF3524 0.67 -0.7 31,125 - GFF3524 0.67 -0.1 31,125 - GFF3524 0.67 -2.2 31,549 - -0.6 31,549 - -0.3 31,550 + -0.8 31,550 + -0.0 31,550 + +0.2 31,550 + +0.3 31,550 + -0.3 31,550 + +0.2 31,550 + -1.0 31,550 + -0.1 31,550 + +0.4 31,550 + +0.3 31,550 + -0.7 31,551 - -0.5 31,551 - -1.1 31,551 - +0.0 31,551 - -0.7 31,551 - -0.1 31,551 - +0.5 31,654 + GFF3525 0.14 -0.6 31,684 + GFF3525 0.19 -1.6 31,684 + GFF3525 0.19 +0.0 31,753 + GFF3525 0.32 +0.0 31,754 - GFF3525 0.32 -1.0 31,754 - GFF3525 0.32 +0.3 32,409 + GFF3526 0.60 -0.0 32,410 - GFF3526 0.60 -0.4 32,416 - GFF3526 0.61 -0.5 32,563 - -1.1 32,733 - GFF3527 0.11 -0.4 32,733 - GFF3527 0.11 +0.4 32,733 - GFF3527 0.11 +0.5 32,733 - GFF3527 0.11 +0.4 32,990 + GFF3527 0.34 -0.6 32,991 - GFF3527 0.34 +0.2 32,991 - GFF3527 0.34 -1.4 32,991 - GFF3527 0.34 -1.2
Or see this region's nucleotide sequence