Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3457 and GFF3458 overlap by 4 nucleotides GFF3458 and GFF3459 overlap by 4 nucleotides GFF3459 and GFF3460 are separated by 39 nucleotides GFF3460 and GFF3461 are separated by 18 nucleotides
GFF3457 - Nitric oxide reductase activation protein NorD, at 278,745 to 280,397
GFF3457
GFF3458 - Rubisco activation protein CbbQ, at 280,394 to 281,212
GFF3458
GFF3459 - Aliphatic amidase AmiE (EC 3.5.1.4), at 281,209 to 282,246
GFF3459
GFF3460 - Urea ABC transporter, ATPase protein UrtE, at 282,286 to 282,975
GFF3460
GFF3461 - Urea ABC transporter, ATPase protein UrtD, at 282,994 to 283,794
GFF3461
Position (kb) 281
282
283 Strain fitness (log2 ratio) -1
0
1 at 280.525 kb on - strand, within GFF3458 at 280.752 kb on + strand, within GFF3458 at 280.753 kb on - strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.890 kb on + strand, within GFF3458 at 281.483 kb on + strand, within GFF3459 at 281.562 kb on - strand, within GFF3459 at 281.562 kb on - strand, within GFF3459 at 281.607 kb on - strand, within GFF3459 at 281.666 kb on + strand, within GFF3459 at 281.673 kb on - strand, within GFF3459 at 281.673 kb on - strand, within GFF3459 at 281.795 kb on + strand, within GFF3459 at 281.796 kb on - strand, within GFF3459 at 281.796 kb on - strand, within GFF3459 at 281.900 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.030 kb on - strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.048 kb on - strand, within GFF3459 at 282.287 kb on + strand at 282.287 kb on + strand at 282.288 kb on - strand at 282.765 kb on - strand, within GFF3460 at 283.007 kb on + strand at 283.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 280,525 - GFF3458 0.16 +1.2 280,752 + GFF3458 0.44 -0.2 280,753 - GFF3458 0.44 -1.5 280,817 + GFF3458 0.52 +0.7 280,817 + GFF3458 0.52 +0.1 280,817 + GFF3458 0.52 -0.7 280,890 + GFF3458 0.61 -0.4 281,483 + GFF3459 0.26 +0.5 281,562 - GFF3459 0.34 +0.5 281,562 - GFF3459 0.34 -0.4 281,607 - GFF3459 0.38 +0.3 281,666 + GFF3459 0.44 +0.1 281,673 - GFF3459 0.45 -0.2 281,673 - GFF3459 0.45 -0.6 281,795 + GFF3459 0.56 +0.5 281,796 - GFF3459 0.57 -0.0 281,796 - GFF3459 0.57 -0.3 281,900 + GFF3459 0.67 -0.8 282,029 + GFF3459 0.79 +0.2 282,029 + GFF3459 0.79 +0.1 282,029 + GFF3459 0.79 -0.0 282,030 - GFF3459 0.79 +1.2 282,047 + GFF3459 0.81 -0.1 282,047 + GFF3459 0.81 +0.1 282,047 + GFF3459 0.81 +0.4 282,047 + GFF3459 0.81 -0.3 282,048 - GFF3459 0.81 -0.1 282,287 + -0.2 282,287 + -0.5 282,288 - +0.5 282,765 - GFF3460 0.69 +0.4 283,007 + -1.4 283,008 - -0.2
Or see this region's nucleotide sequence