Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3446 and GFF3447 are separated by 48 nucleotides GFF3447 and GFF3448 overlap by 4 nucleotides GFF3448 and GFF3449 are separated by 19 nucleotides
GFF3446 - Quinone oxidoreductase (EC 1.6.5.5), at 268,786 to 269,793
GFF3446
GFF3447 - FIG00555764: hypothetical protein, at 269,842 to 270,732
GFF3447
GFF3448 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 270,729 to 271,493
GFF3448
GFF3449 - Intradiol ring-cleavage dioxygenase:Catechol dioxygenase, N-terminal, at 271,513 to 272,379
GFF3449
Position (kb) 270
271
272 Strain fitness (log2 ratio) -2
-1
0
1 at 269.981 kb on + strand, within GFF3447 at 269.981 kb on + strand, within GFF3447 at 270.111 kb on - strand, within GFF3447 at 270.143 kb on + strand, within GFF3447 at 270.143 kb on + strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.537 kb on - strand, within GFF3447 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.420 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.500 kb on - strand at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 272.410 kb on + strand at 272.410 kb on + strand at 272.416 kb on + strand at 272.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 269,981 + GFF3447 0.16 -0.3 269,981 + GFF3447 0.16 +0.2 270,111 - GFF3447 0.30 -0.3 270,143 + GFF3447 0.34 -0.5 270,143 + GFF3447 0.34 +0.2 270,144 - GFF3447 0.34 -0.1 270,144 - GFF3447 0.34 +0.1 270,144 - GFF3447 0.34 -0.5 270,537 - GFF3447 0.78 -1.2 271,003 + GFF3448 0.36 +0.7 271,003 + GFF3448 0.36 +0.3 271,003 + GFF3448 0.36 -0.0 271,003 + GFF3448 0.36 +0.3 271,004 - GFF3448 0.36 +0.7 271,004 - GFF3448 0.36 -0.8 271,004 - GFF3448 0.36 +1.5 271,420 + +0.6 271,493 + -0.7 271,493 + +0.5 271,493 + +0.1 271,493 + +0.3 271,493 + +0.2 271,493 + +0.4 271,494 - +0.7 271,494 - +0.7 271,494 - -0.5 271,494 - -0.7 271,494 - +0.5 271,500 - -0.1 271,930 + GFF3449 0.48 -1.3 271,930 + GFF3449 0.48 +0.2 271,930 + GFF3449 0.48 -0.9 271,931 - GFF3449 0.48 -0.9 271,931 - GFF3449 0.48 -0.2 271,931 - GFF3449 0.48 -0.3 271,931 - GFF3449 0.48 -2.1 271,931 - GFF3449 0.48 +0.1 272,410 + +0.4 272,410 + -0.7 272,416 + +0.6 272,416 + -1.5
Or see this region's nucleotide sequence