Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3386 and GFF3387 are separated by 45 nucleotides GFF3387 and GFF3388 are separated by 64 nucleotides GFF3388 and GFF3389 overlap by 4 nucleotides GFF3389 and GFF3390 are separated by 11 nucleotides
GFF3386 - hypothetical protein, at 207,620 to 209,011
GFF3386
GFF3387 - no description, at 209,057 to 209,179
GFF3387
GFF3388 - Transcriptional regulator, AcrR family, at 209,244 to 209,909
GFF3388
GFF3389 - Glycosyl transferases, related to UDP-glucuronosyltransferase, at 209,906 to 211,126
GFF3389
GFF3390 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 211,138 to 213,063
GFF3390
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.009 kb on + strand at 209.009 kb on + strand at 209.010 kb on - strand at 209.010 kb on - strand at 209.010 kb on - strand at 209.016 kb on + strand at 209.016 kb on + strand at 209.017 kb on - strand at 209.017 kb on - strand at 209.344 kb on - strand, within GFF3388 at 209.390 kb on + strand, within GFF3388 at 209.391 kb on - strand, within GFF3388 at 209.403 kb on + strand, within GFF3388 at 209.403 kb on + strand, within GFF3388 at 209.404 kb on - strand, within GFF3388 at 209.404 kb on - strand, within GFF3388 at 209.404 kb on - strand, within GFF3388 at 209.583 kb on + strand, within GFF3388 at 209.583 kb on + strand, within GFF3388 at 209.584 kb on - strand, within GFF3388 at 209.584 kb on - strand, within GFF3388 at 209.769 kb on + strand, within GFF3388 at 209.769 kb on + strand, within GFF3388 at 209.770 kb on - strand, within GFF3388 at 209.770 kb on - strand, within GFF3388 at 209.770 kb on - strand, within GFF3388 at 209.927 kb on + strand at 209.927 kb on + strand at 209.928 kb on - strand at 209.928 kb on - strand at 209.928 kb on - strand at 210.491 kb on + strand, within GFF3389 at 210.635 kb on + strand, within GFF3389 at 210.636 kb on - strand, within GFF3389 at 210.725 kb on + strand, within GFF3389 at 210.725 kb on + strand, within GFF3389 at 210.726 kb on - strand, within GFF3389 at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.207 kb on + strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.208 kb on - strand at 211.518 kb on - strand, within GFF3390 at 211.518 kb on - strand, within GFF3390 at 211.580 kb on + strand, within GFF3390 at 211.580 kb on + strand, within GFF3390 at 211.581 kb on - strand, within GFF3390
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 209,009 + -0.6 209,009 + -0.7 209,010 - +0.9 209,010 - +0.5 209,010 - -0.2 209,016 + -0.9 209,016 + -1.1 209,017 - -1.1 209,017 - -0.4 209,344 - GFF3388 0.15 +0.2 209,390 + GFF3388 0.22 -0.6 209,391 - GFF3388 0.22 +0.3 209,403 + GFF3388 0.24 +1.3 209,403 + GFF3388 0.24 -0.8 209,404 - GFF3388 0.24 -0.2 209,404 - GFF3388 0.24 -0.1 209,404 - GFF3388 0.24 -0.7 209,583 + GFF3388 0.51 -0.2 209,583 + GFF3388 0.51 -0.3 209,584 - GFF3388 0.51 +0.8 209,584 - GFF3388 0.51 +0.6 209,769 + GFF3388 0.79 +0.5 209,769 + GFF3388 0.79 +0.1 209,770 - GFF3388 0.79 -0.5 209,770 - GFF3388 0.79 +1.9 209,770 - GFF3388 0.79 +0.1 209,927 + -0.3 209,927 + -0.4 209,928 - -0.7 209,928 - -0.0 209,928 - -0.4 210,491 + GFF3389 0.48 -0.1 210,635 + GFF3389 0.60 -2.0 210,636 - GFF3389 0.60 +0.0 210,725 + GFF3389 0.67 -0.1 210,725 + GFF3389 0.67 +0.1 210,726 - GFF3389 0.67 -1.6 211,207 + +0.2 211,207 + -0.3 211,207 + -0.2 211,207 + -0.5 211,207 + -1.2 211,207 + +0.3 211,208 - +0.2 211,208 - +0.1 211,208 - +0.7 211,208 - -0.2 211,518 - GFF3390 0.20 +0.6 211,518 - GFF3390 0.20 +0.3 211,580 + GFF3390 0.23 -0.1 211,580 + GFF3390 0.23 -0.0 211,581 - GFF3390 0.23 +0.3
Or see this region's nucleotide sequence