Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3341 and GFF3342 are separated by 114 nucleotides GFF3342 and GFF3343 are separated by 96 nucleotides
GFF3341 - Chromosome (plasmid) partitioning protein ParB, at 164,837 to 165,805
GFF3341
GFF3342 - FIG00347825: hypothetical protein, at 165,920 to 166,831
GFF3342
GFF3343 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 166,928 to 168,352
GFF3343
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.973 kb on + strand at 166.139 kb on + strand, within GFF3342 at 166.139 kb on + strand, within GFF3342 at 166.160 kb on + strand, within GFF3342 at 166.341 kb on - strand, within GFF3342 at 166.608 kb on - strand, within GFF3342 at 166.608 kb on - strand, within GFF3342 at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.772 kb on + strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 166.773 kb on - strand at 167.166 kb on + strand, within GFF3343 at 167.167 kb on - strand, within GFF3343 at 167.211 kb on + strand, within GFF3343 at 167.212 kb on - strand, within GFF3343 at 167.212 kb on - strand, within GFF3343 at 167.212 kb on - strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.337 kb on + strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.338 kb on - strand, within GFF3343 at 167.520 kb on + strand, within GFF3343 at 167.520 kb on + strand, within GFF3343 at 167.520 kb on + strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.521 kb on - strand, within GFF3343 at 167.610 kb on - strand, within GFF3343 at 167.670 kb on + strand, within GFF3343 at 167.671 kb on - strand, within GFF3343 at 167.671 kb on - strand, within GFF3343 at 167.742 kb on + strand, within GFF3343
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 165,803 + -0.1 165,803 + +1.3 165,803 + -0.4 165,803 + -0.7 165,803 + -0.3 165,803 + +2.6 165,803 + -1.1 165,803 + -1.2 165,804 - +0.3 165,804 - +1.0 165,804 - +0.2 165,804 - -0.6 165,804 - +0.4 165,804 - +0.3 165,804 - -1.2 165,804 - -0.8 165,804 - -0.6 165,804 - +1.1 165,804 - -0.5 165,973 + -1.3 166,139 + GFF3342 0.24 -0.3 166,139 + GFF3342 0.24 +0.8 166,160 + GFF3342 0.26 +0.5 166,341 - GFF3342 0.46 +0.8 166,608 - GFF3342 0.75 -1.1 166,608 - GFF3342 0.75 +0.1 166,772 + +0.4 166,772 + -1.9 166,772 + +0.3 166,772 + +0.2 166,772 + +0.6 166,772 + +1.1 166,772 + +0.3 166,772 + +1.2 166,772 + -0.4 166,773 - -0.0 166,773 - -0.1 166,773 - +0.1 166,773 - -0.1 166,773 - +0.1 166,773 - -0.1 166,773 - +0.8 166,773 - +1.1 166,773 - -0.5 166,773 - +0.2 166,773 - +0.1 166,773 - -0.4 167,166 + GFF3343 0.17 +0.0 167,167 - GFF3343 0.17 -0.2 167,211 + GFF3343 0.20 -0.8 167,212 - GFF3343 0.20 -2.0 167,212 - GFF3343 0.20 +1.1 167,212 - GFF3343 0.20 -0.4 167,337 + GFF3343 0.29 +0.4 167,337 + GFF3343 0.29 -0.5 167,337 + GFF3343 0.29 -0.5 167,337 + GFF3343 0.29 +0.7 167,337 + GFF3343 0.29 -0.2 167,337 + GFF3343 0.29 -1.5 167,337 + GFF3343 0.29 +0.4 167,338 - GFF3343 0.29 -1.1 167,338 - GFF3343 0.29 +0.3 167,338 - GFF3343 0.29 +0.0 167,338 - GFF3343 0.29 -0.2 167,338 - GFF3343 0.29 -0.3 167,338 - GFF3343 0.29 -0.3 167,338 - GFF3343 0.29 -0.9 167,338 - GFF3343 0.29 +2.3 167,520 + GFF3343 0.42 +0.2 167,520 + GFF3343 0.42 -0.4 167,520 + GFF3343 0.42 -0.9 167,521 - GFF3343 0.42 +0.9 167,521 - GFF3343 0.42 -0.8 167,521 - GFF3343 0.42 +1.2 167,521 - GFF3343 0.42 -1.6 167,521 - GFF3343 0.42 +0.1 167,521 - GFF3343 0.42 -0.9 167,521 - GFF3343 0.42 -1.4 167,610 - GFF3343 0.48 -0.6 167,670 + GFF3343 0.52 +0.0 167,671 - GFF3343 0.52 -1.4 167,671 - GFF3343 0.52 +0.2 167,742 + GFF3343 0.57 -0.3
Or see this region's nucleotide sequence