Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF319 and GFF320 overlap by 4 nucleotides GFF320 and GFF321 overlap by 19 nucleotides GFF321 and GFF322 are separated by 33 nucleotides GFF322 and GFF323 overlap by 4 nucleotides
GFF319 - EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR, at 352,499 to 353,140
GFF319
GFF320 - RNA polymerase ECF-type sigma factor, at 353,137 to 353,727
GFF320
GFF321 - hypothetical protein, at 353,709 to 353,975
GFF321
GFF322 - GTP cyclohydrolase II homolog, at 354,009 to 355,151
GFF322
GFF323 - Possible pyrimidine-degrading protein DUF1688, at 355,148 to 356,554
GFF323
Position (kb) 354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 353.283 kb on + strand, within GFF320 at 353.283 kb on + strand, within GFF320 at 353.283 kb on + strand, within GFF320 at 353.284 kb on - strand, within GFF320 at 353.284 kb on - strand, within GFF320 at 353.447 kb on + strand, within GFF320 at 353.447 kb on + strand, within GFF320 at 353.447 kb on + strand, within GFF320 at 353.448 kb on - strand, within GFF320 at 353.448 kb on - strand, within GFF320 at 353.495 kb on + strand, within GFF320 at 353.495 kb on + strand, within GFF320 at 353.495 kb on + strand, within GFF320 at 353.495 kb on + strand, within GFF320 at 353.496 kb on - strand, within GFF320 at 353.496 kb on - strand, within GFF320 at 353.496 kb on - strand, within GFF320 at 353.710 kb on + strand at 353.710 kb on + strand at 353.710 kb on + strand at 353.711 kb on - strand at 353.711 kb on - strand at 353.711 kb on - strand at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.815 kb on + strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 353.816 kb on - strand, within GFF321 at 354.049 kb on + strand at 354.049 kb on + strand at 354.049 kb on + strand at 354.049 kb on + strand at 354.049 kb on + strand at 354.049 kb on + strand at 354.049 kb on + strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.050 kb on - strand at 354.069 kb on + strand at 354.069 kb on + strand at 354.069 kb on + strand at 354.069 kb on + strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.070 kb on - strand at 354.079 kb on - strand at 354.079 kb on - strand at 354.261 kb on + strand, within GFF322 at 354.261 kb on + strand, within GFF322 at 354.417 kb on + strand, within GFF322 at 354.418 kb on - strand, within GFF322 at 354.498 kb on + strand, within GFF322 at 354.498 kb on + strand, within GFF322 at 354.498 kb on + strand, within GFF322 at 354.499 kb on - strand, within GFF322 at 354.499 kb on - strand, within GFF322 at 354.499 kb on - strand, within GFF322 at 354.499 kb on - strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.564 kb on + strand, within GFF322 at 354.565 kb on - strand, within GFF322 at 354.565 kb on - strand, within GFF322 at 354.565 kb on - strand, within GFF322 at 354.565 kb on - strand, within GFF322 at 354.565 kb on - strand, within GFF322 at 354.681 kb on + strand, within GFF322 at 354.681 kb on + strand, within GFF322 at 354.682 kb on - strand, within GFF322 at 354.798 kb on + strand, within GFF322 at 354.798 kb on + strand, within GFF322 at 354.798 kb on + strand, within GFF322 at 354.799 kb on - strand, within GFF322 at 354.799 kb on - strand, within GFF322 at 354.799 kb on - strand, within GFF322 at 354.843 kb on + strand, within GFF322 at 354.844 kb on - strand, within GFF322 at 355.080 kb on + strand at 355.081 kb on - strand at 355.081 kb on - strand at 355.242 kb on - strand at 355.242 kb on - strand at 355.613 kb on + strand, within GFF323 at 355.613 kb on + strand, within GFF323 at 355.613 kb on + strand, within GFF323 at 355.614 kb on - strand, within GFF323 at 355.674 kb on - strand, within GFF323 at 355.674 kb on - strand, within GFF323 at 355.674 kb on - strand, within GFF323 at 355.674 kb on - strand, within GFF323 at 355.674 kb on - strand, within GFF323 at 355.722 kb on - strand, within GFF323 at 355.722 kb on - strand, within GFF323
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 353,283 + GFF320 0.25 -0.9 353,283 + GFF320 0.25 -0.2 353,283 + GFF320 0.25 -0.7 353,284 - GFF320 0.25 -1.2 353,284 - GFF320 0.25 +0.5 353,447 + GFF320 0.52 -0.8 353,447 + GFF320 0.52 +0.3 353,447 + GFF320 0.52 +0.3 353,448 - GFF320 0.53 -1.0 353,448 - GFF320 0.53 -0.2 353,495 + GFF320 0.61 +0.7 353,495 + GFF320 0.61 +1.3 353,495 + GFF320 0.61 +0.3 353,495 + GFF320 0.61 -1.5 353,496 - GFF320 0.61 -0.4 353,496 - GFF320 0.61 +0.3 353,496 - GFF320 0.61 +0.1 353,710 + +1.6 353,710 + -1.4 353,710 + -0.4 353,711 - -1.1 353,711 - -0.8 353,711 - +0.4 353,815 + GFF321 0.40 -0.7 353,815 + GFF321 0.40 -0.5 353,815 + GFF321 0.40 -1.0 353,815 + GFF321 0.40 -2.4 353,815 + GFF321 0.40 -0.8 353,815 + GFF321 0.40 -0.8 353,815 + GFF321 0.40 +0.1 353,815 + GFF321 0.40 -0.3 353,816 - GFF321 0.40 -0.0 353,816 - GFF321 0.40 -0.8 353,816 - GFF321 0.40 +0.1 353,816 - GFF321 0.40 +0.8 353,816 - GFF321 0.40 -0.6 353,816 - GFF321 0.40 +0.1 354,049 + -0.6 354,049 + -0.4 354,049 + +0.1 354,049 + -1.0 354,049 + +0.2 354,049 + -1.5 354,049 + -0.9 354,050 - -0.9 354,050 - -0.3 354,050 - -0.7 354,050 - +0.1 354,050 - -1.6 354,050 - -0.2 354,050 - +0.1 354,069 + -0.7 354,069 + +1.3 354,069 + -0.0 354,069 + -1.4 354,070 - -0.6 354,070 - -0.6 354,070 - +0.6 354,070 - +0.1 354,070 - +2.3 354,070 - +0.9 354,070 - -0.4 354,079 - -1.7 354,079 - -0.2 354,261 + GFF322 0.22 -0.8 354,261 + GFF322 0.22 -0.0 354,417 + GFF322 0.36 +0.1 354,418 - GFF322 0.36 -1.2 354,498 + GFF322 0.43 -0.3 354,498 + GFF322 0.43 +1.7 354,498 + GFF322 0.43 -1.7 354,499 - GFF322 0.43 +0.0 354,499 - GFF322 0.43 -0.2 354,499 - GFF322 0.43 +2.1 354,499 - GFF322 0.43 +0.3 354,564 + GFF322 0.49 +3.3 354,564 + GFF322 0.49 +0.4 354,564 + GFF322 0.49 -1.2 354,564 + GFF322 0.49 -0.1 354,564 + GFF322 0.49 +1.0 354,564 + GFF322 0.49 -0.0 354,565 - GFF322 0.49 +0.2 354,565 - GFF322 0.49 -0.5 354,565 - GFF322 0.49 -0.1 354,565 - GFF322 0.49 +0.1 354,565 - GFF322 0.49 +0.2 354,681 + GFF322 0.59 +0.3 354,681 + GFF322 0.59 -0.8 354,682 - GFF322 0.59 -0.6 354,798 + GFF322 0.69 -0.9 354,798 + GFF322 0.69 -2.6 354,798 + GFF322 0.69 -0.7 354,799 - GFF322 0.69 -0.4 354,799 - GFF322 0.69 +0.8 354,799 - GFF322 0.69 +0.5 354,843 + GFF322 0.73 +0.6 354,844 - GFF322 0.73 +0.0 355,080 + +0.3 355,081 - -0.2 355,081 - -0.5 355,242 - -0.2 355,242 - +1.1 355,613 + GFF323 0.33 +1.8 355,613 + GFF323 0.33 +1.3 355,613 + GFF323 0.33 -1.3 355,614 - GFF323 0.33 -0.1 355,674 - GFF323 0.37 +0.2 355,674 - GFF323 0.37 +0.7 355,674 - GFF323 0.37 -0.8 355,674 - GFF323 0.37 -0.3 355,674 - GFF323 0.37 -0.8 355,722 - GFF323 0.41 -0.7 355,722 - GFF323 0.41 -0.2
Or see this region's nucleotide sequence