Strain Fitness in Variovorax sp. SCN45 around GFF3186

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3186 and GFF3187 are separated by 355 nucleotides GFF3186 - FIG01046500: hypothetical protein, at 353 to 1,687 GFF3186 GFF3187 - hypothetical protein, at 2,043 to 4,073 GFF3187 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.108 kb on + strandat 0.108 kb on + strandat 0.109 kb on - strandat 0.151 kb on + strandat 0.151 kb on + strandat 0.152 kb on - strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.230 kb on + strandat 0.230 kb on + strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.302 kb on + strandat 0.303 kb on - strandat 0.309 kb on + strandat 0.309 kb on + strandat 0.310 kb on - strandat 0.344 kb on + strandat 0.345 kb on - strandat 0.355 kb on - strandat 0.355 kb on - strandat 0.434 kb on - strandat 0.440 kb on - strandat 0.440 kb on - strandat 0.456 kb on + strandat 0.494 kb on + strand, within GFF3186at 0.494 kb on + strand, within GFF3186at 0.494 kb on + strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.516 kb on + strand, within GFF3186at 0.580 kb on + strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.584 kb on + strand, within GFF3186at 0.585 kb on - strand, within GFF3186at 0.585 kb on - strand, within GFF3186at 0.606 kb on + strand, within GFF3186at 0.606 kb on + strand, within GFF3186at 0.607 kb on - strand, within GFF3186at 0.641 kb on + strand, within GFF3186at 0.641 kb on + strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.662 kb on + strand, within GFF3186at 0.789 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.815 kb on - strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.828 kb on + strand, within GFF3186at 0.838 kb on + strand, within GFF3186at 0.839 kb on - strand, within GFF3186at 0.847 kb on - strand, within GFF3186at 0.897 kb on - strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.918 kb on - strand, within GFF3186at 0.918 kb on - strand, within GFF3186at 0.924 kb on + strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 1.066 kb on + strand, within GFF3186at 1.066 kb on + strand, within GFF3186at 1.067 kb on - strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.149 kb on - strand, within GFF3186at 1.169 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.618 kb on + strandat 1.688 kb on - strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.731 kb on - strandat 1.770 kb on + strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.797 kb on + strandat 1.798 kb on - strandat 1.798 kb on - strandat 1.910 kb on - strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.976 kb on - strandat 1.976 kb on - strandat 2.094 kb on + strandat 2.095 kb on - strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.120 kb on - strandat 2.120 kb on - strandat 2.183 kb on + strandat 2.184 kb on - strandat 2.184 kb on - strandat 2.250 kb on - strand, within GFF3187at 2.250 kb on - strand, within GFF3187at 2.256 kb on - strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.512 kb on + strand, within GFF3187at 2.563 kb on + strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.662 kb on + strand, within GFF3187at 2.663 kb on - strand, within GFF3187at 2.663 kb on - strand, within GFF3187

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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108 + +0.1
108 + +0.5
109 - +0.1
151 + +0.0
151 + -0.0
152 - +0.2
209 + -0.3
209 + +0.3
230 + +0.0
230 + -0.1
231 - +0.5
231 - -0.7
231 - -0.8
231 - +0.6
302 + -0.4
303 - -0.4
309 + +0.1
309 + -0.6
310 - -0.1
344 + +0.6
345 - +0.3
355 - +0.2
355 - -0.3
434 - -0.4
440 - -1.2
440 - -0.4
456 + +0.2
494 + GFF3186 0.11 -0.2
494 + GFF3186 0.11 -0.8
494 + GFF3186 0.11 +0.4
495 - GFF3186 0.11 -0.2
495 - GFF3186 0.11 +0.1
495 - GFF3186 0.11 -0.5
516 + GFF3186 0.12 -0.4
580 + GFF3186 0.17 -2.1
581 - GFF3186 0.17 +0.4
581 - GFF3186 0.17 +0.1
581 - GFF3186 0.17 +0.3
581 - GFF3186 0.17 -1.4
581 - GFF3186 0.17 -0.3
584 + GFF3186 0.17 -0.2
585 - GFF3186 0.17 +0.9
585 - GFF3186 0.17 -0.9
606 + GFF3186 0.19 -0.2
606 + GFF3186 0.19 +0.3
607 - GFF3186 0.19 +1.2
641 + GFF3186 0.22 -0.2
641 + GFF3186 0.22 -1.7
642 - GFF3186 0.22 -0.3
642 - GFF3186 0.22 +0.9
642 - GFF3186 0.22 +0.6
662 + GFF3186 0.23 -1.1
789 + GFF3186 0.33 -0.4
814 + GFF3186 0.35 -0.3
814 + GFF3186 0.35 +0.3
814 + GFF3186 0.35 -0.6
815 - GFF3186 0.35 +0.6
816 + GFF3186 0.35 -0.1
816 + GFF3186 0.35 +0.2
816 + GFF3186 0.35 -0.3
816 + GFF3186 0.35 +1.2
816 + GFF3186 0.35 -0.0
816 + GFF3186 0.35 +0.2
816 + GFF3186 0.35 +0.1
816 + GFF3186 0.35 +0.1
816 + GFF3186 0.35 -1.1
816 + GFF3186 0.35 -0.2
816 + GFF3186 0.35 +0.3
816 + GFF3186 0.35 -1.1
817 - GFF3186 0.35 -0.4
817 - GFF3186 0.35 -0.1
817 - GFF3186 0.35 -0.5
817 - GFF3186 0.35 -1.3
817 - GFF3186 0.35 -0.4
817 - GFF3186 0.35 -0.4
817 - GFF3186 0.35 -1.2
817 - GFF3186 0.35 -0.3
817 - GFF3186 0.35 -0.6
817 - GFF3186 0.35 -0.3
817 - GFF3186 0.35 +0.1
817 - GFF3186 0.35 -1.2
828 + GFF3186 0.36 -0.1
838 + GFF3186 0.36 -0.7
839 - GFF3186 0.36 +0.3
847 - GFF3186 0.37 -0.5
897 - GFF3186 0.41 +0.1
917 + GFF3186 0.42 -0.5
917 + GFF3186 0.42 +0.6
917 + GFF3186 0.42 -0.4
918 - GFF3186 0.42 -1.1
918 - GFF3186 0.42 +0.1
924 + GFF3186 0.43 +0.4
925 - GFF3186 0.43 +0.3
925 - GFF3186 0.43 -2.5
925 - GFF3186 0.43 +0.6
1,066 + GFF3186 0.53 -0.4
1,066 + GFF3186 0.53 -0.3
1,067 - GFF3186 0.53 +1.1
1,070 + GFF3186 0.54 -0.9
1,070 + GFF3186 0.54 +0.6
1,070 + GFF3186 0.54 -1.0
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.8
1,070 + GFF3186 0.54 -0.2
1,070 + GFF3186 0.54 -0.5
1,070 + GFF3186 0.54 -1.3
1,070 + GFF3186 0.54 -0.7
1,071 - GFF3186 0.54 -0.1
1,071 - GFF3186 0.54 +0.4
1,071 - GFF3186 0.54 -0.7
1,071 - GFF3186 0.54 -0.1
1,071 - GFF3186 0.54 -0.4
1,071 - GFF3186 0.54 -0.6
1,071 - GFF3186 0.54 -0.4
1,071 - GFF3186 0.54 +0.2
1,071 - GFF3186 0.54 -0.1
1,071 - GFF3186 0.54 -0.9
1,112 + GFF3186 0.57 -0.4
1,112 + GFF3186 0.57 -0.3
1,148 + GFF3186 0.60 -0.6
1,148 + GFF3186 0.60 +0.1
1,149 - GFF3186 0.60 -0.3
1,169 + GFF3186 0.61 -0.8
1,223 + GFF3186 0.65 -0.5
1,223 + GFF3186 0.65 -0.1
1,223 + GFF3186 0.65 -0.0
1,224 - GFF3186 0.65 +0.1
1,224 - GFF3186 0.65 -0.3
1,224 - GFF3186 0.65 +1.3
1,305 + GFF3186 0.71 -1.0
1,305 + GFF3186 0.71 -0.3
1,305 + GFF3186 0.71 -0.1
1,306 - GFF3186 0.71 -0.1
1,306 - GFF3186 0.71 -1.3
1,332 + GFF3186 0.73 +0.3
1,332 + GFF3186 0.73 +1.9
1,332 + GFF3186 0.73 -0.7
1,332 + GFF3186 0.73 +0.2
1,332 + GFF3186 0.73 -0.3
1,332 + GFF3186 0.73 -0.5
1,333 - GFF3186 0.73 -0.3
1,333 - GFF3186 0.73 +0.7
1,547 + GFF3186 0.89 -2.1
1,547 + GFF3186 0.89 +0.8
1,547 + GFF3186 0.89 +1.1
1,547 + GFF3186 0.89 +0.0
1,547 + GFF3186 0.89 -0.0
1,547 + GFF3186 0.89 +0.9
1,548 - GFF3186 0.90 +0.4
1,548 - GFF3186 0.90 -0.3
1,618 + -0.4
1,688 - -0.1
1,730 + -1.4
1,730 + +0.1
1,730 + -1.4
1,731 - +0.1
1,770 + -2.1
1,771 - +0.7
1,771 - -0.1
1,771 - -0.1
1,797 + -0.3
1,798 - -0.2
1,798 - +0.2
1,910 - +1.9
1,975 + -0.2
1,975 + -0.4
1,975 + -0.4
1,976 - -0.5
1,976 - +0.2
2,094 + -0.3
2,095 - +0.1
2,119 + +1.3
2,119 + -0.0
2,119 + -1.7
2,119 + -0.7
2,119 + -0.6
2,119 + -0.5
2,120 - -0.2
2,120 - -0.3
2,183 + -0.1
2,184 - -0.4
2,184 - -0.6
2,250 - GFF3187 0.10 -0.4
2,250 - GFF3187 0.10 -1.4
2,256 - GFF3187 0.10 -2.1
2,420 + GFF3187 0.19 +0.1
2,420 + GFF3187 0.19 +0.1
2,420 + GFF3187 0.19 -0.7
2,421 - GFF3187 0.19 -0.8
2,421 - GFF3187 0.19 -0.5
2,459 - GFF3187 0.20 +0.9
2,459 - GFF3187 0.20 +0.0
2,491 + GFF3187 0.22 +0.5
2,491 + GFF3187 0.22 +0.9
2,491 + GFF3187 0.22 +0.7
2,492 - GFF3187 0.22 -1.1
2,492 - GFF3187 0.22 -0.3
2,512 + GFF3187 0.23 -0.2
2,563 + GFF3187 0.26 +0.7
2,564 - GFF3187 0.26 -0.4
2,564 - GFF3187 0.26 -0.6
2,662 + GFF3187 0.30 +0.4
2,663 - GFF3187 0.31 +0.4
2,663 - GFF3187 0.31 -0.1

Or see this region's nucleotide sequence