Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3157 and GFF3158 are separated by 4 nucleotides GFF3158 and GFF3159 are separated by 110 nucleotides GFF3159 and GFF3160 are separated by 34 nucleotides
GFF3157 - Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6), at 593,344 to 594,276
GFF3157
GFF3158 - Sulfite dehydrogenase (quinone), iron-sulfur subunit SoeB (EC 1.8.5.6), at 594,281 to 595,009
GFF3158
GFF3159 - Sulfite dehydrogenase (quinone), molybdopterin-containing subunit SoeA (EC 1.8.5.6), at 595,120 to 598,065
GFF3159
GFF3160 - Transcriptional regulator YeiE, LysR family, at 598,100 to 599,089
GFF3160
Position (kb) 595
596
597
598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 594.325 kb on - strand at 594.325 kb on - strand at 594.499 kb on - strand, within GFF3158 at 594.612 kb on + strand, within GFF3158 at 594.753 kb on + strand, within GFF3158 at 594.798 kb on + strand, within GFF3158 at 594.956 kb on - strand at 595.145 kb on + strand at 595.212 kb on - strand at 595.212 kb on - strand at 595.470 kb on - strand, within GFF3159 at 595.470 kb on - strand, within GFF3159 at 595.571 kb on + strand, within GFF3159 at 595.571 kb on + strand, within GFF3159 at 595.572 kb on - strand, within GFF3159 at 595.572 kb on - strand, within GFF3159 at 595.625 kb on + strand, within GFF3159 at 595.625 kb on + strand, within GFF3159 at 595.626 kb on - strand, within GFF3159 at 595.626 kb on - strand, within GFF3159 at 595.727 kb on + strand, within GFF3159 at 595.728 kb on - strand, within GFF3159 at 595.821 kb on - strand, within GFF3159 at 595.884 kb on - strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.908 kb on - strand, within GFF3159 at 595.908 kb on - strand, within GFF3159 at 595.931 kb on + strand, within GFF3159 at 595.932 kb on - strand, within GFF3159 at 595.958 kb on + strand, within GFF3159 at 595.958 kb on + strand, within GFF3159 at 595.958 kb on + strand, within GFF3159 at 596.078 kb on + strand, within GFF3159 at 596.087 kb on + strand, within GFF3159 at 596.087 kb on + strand, within GFF3159 at 596.277 kb on - strand, within GFF3159 at 597.056 kb on + strand, within GFF3159 at 597.283 kb on + strand, within GFF3159 at 597.284 kb on - strand, within GFF3159 at 597.554 kb on + strand, within GFF3159 at 597.555 kb on - strand, within GFF3159 at 597.605 kb on + strand, within GFF3159 at 597.606 kb on - strand, within GFF3159 at 597.974 kb on + strand at 597.974 kb on + strand at 597.974 kb on + strand at 598.137 kb on + strand at 598.137 kb on + strand at 598.356 kb on + strand, within GFF3160 at 598.490 kb on + strand, within GFF3160 at 598.491 kb on - strand, within GFF3160 at 598.972 kb on - strand, within GFF3160
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 594,325 - -1.7 594,325 - -3.4 594,499 - GFF3158 0.30 -1.2 594,612 + GFF3158 0.45 +0.7 594,753 + GFF3158 0.65 -0.5 594,798 + GFF3158 0.71 -0.6 594,956 - -1.5 595,145 + -0.7 595,212 - +0.1 595,212 - +0.4 595,470 - GFF3159 0.12 -2.0 595,470 - GFF3159 0.12 +0.4 595,571 + GFF3159 0.15 -0.7 595,571 + GFF3159 0.15 -0.9 595,572 - GFF3159 0.15 +0.1 595,572 - GFF3159 0.15 -0.8 595,625 + GFF3159 0.17 -1.4 595,625 + GFF3159 0.17 -0.1 595,626 - GFF3159 0.17 +0.3 595,626 - GFF3159 0.17 -0.4 595,727 + GFF3159 0.21 -0.8 595,728 - GFF3159 0.21 +0.2 595,821 - GFF3159 0.24 +0.2 595,884 - GFF3159 0.26 +0.5 595,907 + GFF3159 0.27 -0.4 595,907 + GFF3159 0.27 -1.9 595,907 + GFF3159 0.27 -1.2 595,908 - GFF3159 0.27 +0.6 595,908 - GFF3159 0.27 -0.3 595,931 + GFF3159 0.28 -0.5 595,932 - GFF3159 0.28 -0.7 595,958 + GFF3159 0.28 -0.4 595,958 + GFF3159 0.28 -0.4 595,958 + GFF3159 0.28 +0.3 596,078 + GFF3159 0.33 +1.6 596,087 + GFF3159 0.33 -1.2 596,087 + GFF3159 0.33 -0.5 596,277 - GFF3159 0.39 -1.0 597,056 + GFF3159 0.66 +0.6 597,283 + GFF3159 0.73 -0.2 597,284 - GFF3159 0.73 -0.3 597,554 + GFF3159 0.83 +0.1 597,555 - GFF3159 0.83 -0.9 597,605 + GFF3159 0.84 +0.9 597,606 - GFF3159 0.84 -0.7 597,974 + -0.8 597,974 + -0.0 597,974 + +0.3 598,137 + +0.2 598,137 + -0.7 598,356 + GFF3160 0.26 -0.7 598,490 + GFF3160 0.39 +0.6 598,491 - GFF3160 0.39 -1.7 598,972 - GFF3160 0.88 -0.6
Or see this region's nucleotide sequence