Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2908 and GFF2909 are separated by 38 nucleotides GFF2909 and GFF2910 are separated by 51 nucleotides
GFF2908 - BUG/TctC family periplasmic protein, at 335,896 to 336,897
GFF2908
GFF2909 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 336,936 to 337,847
GFF2909
GFF2910 - BUG/TctC family periplasmic protein, at 337,899 to 338,897
GFF2910
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.122 kb on + strand, within GFF2908 at 336.122 kb on + strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.317 kb on + strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.543 kb on - strand, within GFF2908 at 336.608 kb on + strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.874 kb on - strand at 337.103 kb on - strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.217 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.283 kb on - strand, within GFF2909 at 337.309 kb on + strand, within GFF2909 at 337.426 kb on + strand, within GFF2909 at 337.427 kb on - strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.751 kb on - strand, within GFF2909 at 337.751 kb on - strand, within GFF2909 at 338.242 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.320 kb on + strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.321 kb on - strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.329 kb on + strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.330 kb on - strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.497 kb on + strand, within GFF2910 at 338.555 kb on - strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.605 kb on + strand, within GFF2910 at 338.606 kb on - strand, within GFF2910 at 338.606 kb on - strand, within GFF2910
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 336,122 + GFF2908 0.23 +0.9 336,122 + GFF2908 0.23 -0.9 336,123 - GFF2908 0.23 +0.8 336,123 - GFF2908 0.23 -0.8 336,123 - GFF2908 0.23 -0.2 336,317 + GFF2908 0.42 +0.6 336,318 - GFF2908 0.42 -0.0 336,318 - GFF2908 0.42 -0.4 336,318 - GFF2908 0.42 -0.2 336,518 + GFF2908 0.62 +0.4 336,518 + GFF2908 0.62 -0.4 336,518 + GFF2908 0.62 -0.1 336,518 + GFF2908 0.62 -0.8 336,519 - GFF2908 0.62 +0.2 336,519 - GFF2908 0.62 +0.4 336,543 - GFF2908 0.65 +0.2 336,608 + GFF2908 0.71 -0.0 336,609 - GFF2908 0.71 -0.8 336,609 - GFF2908 0.71 -0.1 336,874 - -1.0 337,103 - GFF2909 0.18 -1.8 337,168 + GFF2909 0.25 +0.0 337,168 + GFF2909 0.25 -0.1 337,168 + GFF2909 0.25 +0.0 337,169 - GFF2909 0.26 -0.2 337,169 - GFF2909 0.26 -1.0 337,217 - GFF2909 0.31 -0.7 337,241 - GFF2909 0.33 -1.0 337,241 - GFF2909 0.33 -0.5 337,252 + GFF2909 0.35 -1.0 337,252 + GFF2909 0.35 -1.0 337,252 + GFF2909 0.35 +0.4 337,253 - GFF2909 0.35 -0.6 337,253 - GFF2909 0.35 -0.7 337,283 - GFF2909 0.38 -1.4 337,309 + GFF2909 0.41 -0.2 337,426 + GFF2909 0.54 -0.9 337,427 - GFF2909 0.54 -1.0 337,507 + GFF2909 0.63 -1.5 337,507 + GFF2909 0.63 +2.0 337,508 - GFF2909 0.63 -0.2 337,508 - GFF2909 0.63 +0.2 337,508 - GFF2909 0.63 +0.1 337,750 + GFF2909 0.89 +0.3 337,750 + GFF2909 0.89 -0.2 337,751 - GFF2909 0.89 -0.8 337,751 - GFF2909 0.89 +0.6 338,242 + GFF2910 0.34 -0.2 338,320 + GFF2910 0.42 +0.0 338,320 + GFF2910 0.42 -0.9 338,321 - GFF2910 0.42 -0.1 338,321 - GFF2910 0.42 -1.0 338,329 + GFF2910 0.43 -0.6 338,329 + GFF2910 0.43 +0.6 338,329 + GFF2910 0.43 +0.0 338,329 + GFF2910 0.43 -0.3 338,330 - GFF2910 0.43 +0.1 338,330 - GFF2910 0.43 -0.2 338,330 - GFF2910 0.43 -0.9 338,330 - GFF2910 0.43 -1.5 338,497 + GFF2910 0.60 -0.4 338,497 + GFF2910 0.60 -1.8 338,497 + GFF2910 0.60 -0.8 338,555 - GFF2910 0.66 -0.5 338,605 + GFF2910 0.71 +1.6 338,605 + GFF2910 0.71 -0.7 338,605 + GFF2910 0.71 +0.7 338,606 - GFF2910 0.71 -0.0 338,606 - GFF2910 0.71 +0.0
Or see this region's nucleotide sequence