Strain Fitness in Variovorax sp. SCN45 around GFF2890

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2888 and GFF2889 overlap by 8 nucleotidesGFF2889 and GFF2890 overlap by 4 nucleotidesGFF2890 and GFF2891 are separated by 0 nucleotides GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737 GFF2888 GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491 GFF2889 GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486 GFF2890 GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359 GFF2891 Position (kb) 315 316 317Strain fitness (log2 ratio) -1 0 1 2at 314.718 kb on - strandat 314.718 kb on - strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.761 kb on + strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 314.762 kb on - strandat 315.041 kb on - strand, within GFF2889at 315.603 kb on + strand, within GFF2890at 315.603 kb on + strand, within GFF2890at 315.604 kb on - strand, within GFF2890at 315.673 kb on - strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.960 kb on + strand, within GFF2890at 315.961 kb on - strand, within GFF2890at 315.981 kb on + strand, within GFF2890at 315.982 kb on - strand, within GFF2890at 316.246 kb on - strand, within GFF2890at 316.297 kb on - strand, within GFF2890at 316.297 kb on - strand, within GFF2890at 316.555 kb on - strandat 316.555 kb on - strandat 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.935 kb on + strand, within GFF2891at 317.034 kb on + strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.227 kb on - strand, within GFF2891at 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.367 kb on - strandat 317.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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314,718 - +0.9
314,718 - -0.4
314,761 + -0.7
314,761 + -0.8
314,761 + +0.3
314,761 + -0.7
314,761 + +0.5
314,761 + +0.9
314,762 - +0.2
314,762 - -0.1
314,762 - -0.5
314,762 - +0.6
314,762 - -0.7
314,762 - +0.4
314,762 - -1.0
314,762 - -1.4
315,041 - GFF2889 0.41 -0.3
315,603 + GFF2890 0.12 -0.5
315,603 + GFF2890 0.12 +0.4
315,604 - GFF2890 0.12 +0.6
315,673 - GFF2890 0.19 -0.5
315,813 + GFF2890 0.33 +0.1
315,813 + GFF2890 0.33 -0.3
315,813 + GFF2890 0.33 +0.2
315,814 - GFF2890 0.33 -0.3
315,814 - GFF2890 0.33 -0.2
315,814 - GFF2890 0.33 +0.4
315,814 - GFF2890 0.33 -0.7
315,814 - GFF2890 0.33 +0.1
315,960 + GFF2890 0.47 +0.1
315,961 - GFF2890 0.47 +0.9
315,981 + GFF2890 0.49 -0.6
315,982 - GFF2890 0.49 -1.0
316,246 - GFF2890 0.76 +0.4
316,297 - GFF2890 0.81 -0.2
316,297 - GFF2890 0.81 +0.3
316,555 - +0.3
316,555 - +0.1
316,587 + GFF2891 0.11 -0.6
316,587 + GFF2891 0.11 +1.0
316,587 + GFF2891 0.11 -0.2
316,587 + GFF2891 0.11 +0.9
316,588 - GFF2891 0.12 -1.7
316,588 - GFF2891 0.12 -0.4
316,588 - GFF2891 0.12 -0.1
316,588 - GFF2891 0.12 +0.8
316,588 - GFF2891 0.12 -1.4
316,588 - GFF2891 0.12 +0.8
316,683 + GFF2891 0.22 -0.9
316,683 + GFF2891 0.22 -1.5
316,683 + GFF2891 0.22 +0.1
316,683 + GFF2891 0.22 -0.2
316,684 - GFF2891 0.23 -0.7
316,684 - GFF2891 0.23 +0.1
316,692 + GFF2891 0.23 -0.4
316,692 + GFF2891 0.23 -0.1
316,692 + GFF2891 0.23 +0.5
316,692 + GFF2891 0.23 -0.0
316,692 + GFF2891 0.23 -0.5
316,692 + GFF2891 0.23 -0.1
316,693 - GFF2891 0.24 -0.3
316,693 - GFF2891 0.24 -0.5
316,693 - GFF2891 0.24 +0.6
316,693 - GFF2891 0.24 -0.6
316,693 - GFF2891 0.24 -0.0
316,693 - GFF2891 0.24 +0.1
316,935 + GFF2891 0.51 +0.9
317,034 + GFF2891 0.63 -0.9
317,035 - GFF2891 0.63 -0.4
317,035 - GFF2891 0.63 -0.2
317,035 - GFF2891 0.63 -0.1
317,107 - GFF2891 0.71 -0.4
317,107 - GFF2891 0.71 +0.1
317,107 - GFF2891 0.71 +1.1
317,107 - GFF2891 0.71 +2.2
317,119 - GFF2891 0.72 -0.7
317,119 - GFF2891 0.72 -0.2
317,226 + GFF2891 0.85 -0.5
317,226 + GFF2891 0.85 -0.4
317,227 - GFF2891 0.85 -0.3
317,366 + -0.3
317,366 + -0.6
317,366 + -0.3
317,366 + -0.4
317,366 + -0.3
317,367 - -0.1
317,367 - +1.2

Or see this region's nucleotide sequence