Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2703 and GFF2704 are separated by 10 nucleotides GFF2704 and GFF2705 are separated by 6 nucleotides GFF2705 and GFF2706 are separated by 530 nucleotides
GFF2703 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 131,005 to 131,868
GFF2703
GFF2704 - Hydroxymethylpyrimidine ABC transporter, ATP-binding protein, at 131,879 to 132,673
GFF2704
GFF2705 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 132,680 to 133,711
GFF2705
GFF2706 - VgrG protein, at 134,242 to 136,962
GFF2706
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 132.749 kb on - strand at 132.784 kb on - strand, within GFF2705 at 132.861 kb on + strand, within GFF2705 at 132.861 kb on + strand, within GFF2705 at 133.041 kb on + strand, within GFF2705 at 133.045 kb on - strand, within GFF2705 at 133.335 kb on + strand, within GFF2705 at 133.341 kb on + strand, within GFF2705 at 133.341 kb on + strand, within GFF2705 at 133.342 kb on - strand, within GFF2705 at 133.342 kb on - strand, within GFF2705 at 133.521 kb on + strand, within GFF2705 at 133.522 kb on - strand, within GFF2705 at 133.812 kb on + strand at 133.870 kb on - strand at 133.945 kb on - strand at 134.049 kb on + strand at 134.049 kb on + strand at 134.165 kb on + strand at 134.166 kb on - strand at 134.299 kb on + strand at 134.408 kb on - strand at 134.660 kb on - strand, within GFF2706 at 134.698 kb on + strand, within GFF2706 at 134.698 kb on + strand, within GFF2706 at 134.699 kb on - strand, within GFF2706
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 132,749 - +0.8 132,784 - GFF2705 0.10 +0.6 132,861 + GFF2705 0.18 -1.0 132,861 + GFF2705 0.18 +0.6 133,041 + GFF2705 0.35 -0.3 133,045 - GFF2705 0.35 +0.6 133,335 + GFF2705 0.63 -0.9 133,341 + GFF2705 0.64 +0.2 133,341 + GFF2705 0.64 +0.2 133,342 - GFF2705 0.64 -0.6 133,342 - GFF2705 0.64 +0.5 133,521 + GFF2705 0.81 -0.2 133,522 - GFF2705 0.82 -0.7 133,812 + -1.0 133,870 - -0.8 133,945 - -0.2 134,049 + -1.4 134,049 + +0.3 134,165 + -0.5 134,166 - +1.2 134,299 + -0.1 134,408 - +0.2 134,660 - GFF2706 0.15 +0.6 134,698 + GFF2706 0.17 -0.9 134,698 + GFF2706 0.17 -0.2 134,699 - GFF2706 0.17 -1.6
Or see this region's nucleotide sequence