Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2239 and GFF2240 are separated by 23 nucleotides GFF2240 and GFF2241 are separated by 122 nucleotides GFF2241 and GFF2242 overlap by 10 nucleotides GFF2242 and GFF2243 are separated by 135 nucleotides
GFF2239 - no description, at 298,755 to 299,171
GFF2239
GFF2240 - hypothetical protein, at 299,195 to 299,704
GFF2240
GFF2241 - Transcriptional regulator, AcrR family, at 299,827 to 300,435
GFF2241
GFF2242 - no description, at 300,426 to 300,692
GFF2242
GFF2243 - Ornithine cyclodeaminase (EC 4.3.1.12), at 300,828 to 301,787
GFF2243
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 299.049 kb on + strand, within GFF2239 at 299.169 kb on + strand at 299.169 kb on + strand at 299.169 kb on + strand at 299.169 kb on + strand at 299.169 kb on + strand at 299.170 kb on - strand at 299.170 kb on - strand at 299.170 kb on - strand at 299.437 kb on - strand, within GFF2240 at 299.544 kb on + strand, within GFF2240 at 299.667 kb on + strand at 299.974 kb on + strand, within GFF2241 at 299.975 kb on - strand, within GFF2241 at 299.980 kb on + strand, within GFF2241 at 299.981 kb on - strand, within GFF2241 at 299.981 kb on - strand, within GFF2241 at 299.981 kb on - strand, within GFF2241 at 300.196 kb on + strand, within GFF2241 at 300.196 kb on + strand, within GFF2241 at 300.196 kb on + strand, within GFF2241 at 300.197 kb on - strand, within GFF2241 at 300.197 kb on - strand, within GFF2241 at 300.197 kb on - strand, within GFF2241 at 300.397 kb on + strand at 300.397 kb on + strand at 300.398 kb on - strand at 300.398 kb on - strand at 300.433 kb on + strand at 300.434 kb on - strand at 300.520 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.529 kb on + strand, within GFF2242 at 300.530 kb on - strand, within GFF2242 at 300.530 kb on - strand, within GFF2242 at 300.530 kb on - strand, within GFF2242 at 300.530 kb on - strand, within GFF2242 at 300.530 kb on - strand, within GFF2242 at 300.766 kb on + strand at 300.766 kb on + strand at 300.767 kb on - strand at 300.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 299,049 + GFF2239 0.71 -0.9 299,169 + -0.7 299,169 + -0.1 299,169 + -0.3 299,169 + -0.7 299,169 + +0.0 299,170 - +1.8 299,170 - -1.0 299,170 - +0.1 299,437 - GFF2240 0.47 -0.0 299,544 + GFF2240 0.68 -0.4 299,667 + +0.1 299,974 + GFF2241 0.24 -1.5 299,975 - GFF2241 0.24 -2.0 299,980 + GFF2241 0.25 -0.2 299,981 - GFF2241 0.25 +0.5 299,981 - GFF2241 0.25 -0.2 299,981 - GFF2241 0.25 +0.8 300,196 + GFF2241 0.61 -1.4 300,196 + GFF2241 0.61 -1.1 300,196 + GFF2241 0.61 -0.6 300,197 - GFF2241 0.61 -0.9 300,197 - GFF2241 0.61 -0.2 300,197 - GFF2241 0.61 +0.8 300,397 + -0.2 300,397 + -0.3 300,398 - -0.0 300,398 - -0.2 300,433 + -0.1 300,434 - -0.2 300,520 + GFF2242 0.35 +1.2 300,529 + GFF2242 0.39 +0.1 300,529 + GFF2242 0.39 -0.2 300,529 + GFF2242 0.39 +0.3 300,529 + GFF2242 0.39 -0.2 300,529 + GFF2242 0.39 +2.0 300,529 + GFF2242 0.39 -0.5 300,529 + GFF2242 0.39 +0.2 300,530 - GFF2242 0.39 -1.1 300,530 - GFF2242 0.39 -0.2 300,530 - GFF2242 0.39 -0.6 300,530 - GFF2242 0.39 +0.4 300,530 - GFF2242 0.39 +0.0 300,766 + +0.3 300,766 + +0.9 300,767 - -0.4 300,777 - +0.5
Or see this region's nucleotide sequence