Strain Fitness in Variovorax sp. SCN45 around GFF2000

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1998 and GFF1999 are separated by 55 nucleotidesGFF1999 and GFF2000 are separated by 223 nucleotidesGFF2000 and GFF2001 are separated by 32 nucleotidesGFF2001 and GFF2002 are separated by 54 nucleotides GFF1998 - Two-component system sensor histidine kinase, at 41,421 to 43,208 GFF1998 GFF1999 - GTG start codon, at 43,264 to 43,698 GFF1999 GFF2000 - Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17), at 43,922 to 45,805 GFF2000 GFF2001 - Putative phosphatase YieH, at 45,838 to 46,530 GFF2001 GFF2002 - Thioredoxin related protein PA2694, at 46,585 to 46,911 GFF2002 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.149 kb on + strandat 43.149 kb on + strandat 43.150 kb on - strandat 43.206 kb on + strandat 43.253 kb on + strandat 43.447 kb on + strand, within GFF1999at 43.664 kb on - strandat 43.800 kb on + strandat 43.808 kb on + strandat 43.904 kb on + strandat 43.904 kb on + strandat 43.905 kb on - strandat 43.905 kb on - strandat 43.905 kb on - strandat 43.905 kb on - strandat 43.905 kb on - strandat 43.905 kb on - strandat 44.072 kb on + strandat 44.073 kb on - strandat 44.073 kb on - strandat 44.073 kb on - strandat 44.090 kb on + strandat 44.090 kb on + strandat 44.091 kb on - strandat 44.091 kb on - strandat 44.181 kb on - strand, within GFF2000at 44.181 kb on - strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.366 kb on + strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.367 kb on - strand, within GFF2000at 44.411 kb on + strand, within GFF2000at 44.411 kb on + strand, within GFF2000at 44.412 kb on - strand, within GFF2000at 44.412 kb on - strand, within GFF2000at 44.777 kb on + strand, within GFF2000at 44.777 kb on + strand, within GFF2000at 44.778 kb on - strand, within GFF2000at 44.832 kb on - strand, within GFF2000at 44.832 kb on - strand, within GFF2000at 44.873 kb on + strand, within GFF2000at 44.873 kb on + strand, within GFF2000at 44.873 kb on + strand, within GFF2000at 44.874 kb on - strand, within GFF2000at 45.005 kb on + strand, within GFF2000at 45.005 kb on + strand, within GFF2000at 45.005 kb on + strand, within GFF2000at 45.006 kb on - strand, within GFF2000at 45.006 kb on - strand, within GFF2000at 45.044 kb on + strand, within GFF2000at 45.044 kb on + strand, within GFF2000at 45.044 kb on + strand, within GFF2000at 45.044 kb on + strand, within GFF2000at 45.045 kb on - strand, within GFF2000at 45.266 kb on + strand, within GFF2000at 45.266 kb on + strand, within GFF2000at 45.266 kb on + strand, within GFF2000at 45.306 kb on - strand, within GFF2000at 45.371 kb on + strand, within GFF2000at 45.371 kb on + strand, within GFF2000at 45.371 kb on + strand, within GFF2000at 45.371 kb on + strand, within GFF2000at 45.372 kb on - strand, within GFF2000at 45.372 kb on - strand, within GFF2000at 45.372 kb on - strand, within GFF2000at 45.372 kb on - strand, within GFF2000at 45.437 kb on + strand, within GFF2000at 45.437 kb on + strand, within GFF2000at 45.437 kb on + strand, within GFF2000at 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.779 kb on + strandat 45.780 kb on + strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.780 kb on - strandat 45.826 kb on + strandat 45.826 kb on + strandat 45.826 kb on + strandat 45.826 kb on + strandat 45.827 kb on - strandat 45.828 kb on - strandat 46.294 kb on + strand, within GFF2001at 46.294 kb on + strand, within GFF2001at 46.294 kb on + strand, within GFF2001at 46.294 kb on + strand, within GFF2001at 46.294 kb on + strand, within GFF2001at 46.294 kb on + strand, within GFF2001at 46.295 kb on - strand, within GFF2001at 46.295 kb on - strand, within GFF2001at 46.295 kb on - strand, within GFF2001at 46.295 kb on - strand, within GFF2001at 46.295 kb on - strand, within GFF2001at 46.405 kb on + strand, within GFF2001at 46.597 kb on + strandat 46.598 kb on - strandat 46.598 kb on - strandat 46.598 kb on - strandat 46.727 kb on - strand, within GFF2002at 46.727 kb on - strand, within GFF2002

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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43,149 + +0.9
43,149 + +0.4
43,150 - -0.9
43,206 + +0.9
43,253 + -0.5
43,447 + GFF1999 0.42 -0.2
43,664 - +0.6
43,800 + +0.8
43,808 + -0.8
43,904 + -0.5
43,904 + -0.3
43,905 - +0.4
43,905 - -1.9
43,905 - -2.1
43,905 - +0.1
43,905 - -1.1
43,905 - -0.6
44,072 + -0.4
44,073 - +0.4
44,073 - -0.8
44,073 - -1.0
44,090 + -0.6
44,090 + +1.4
44,091 - -2.4
44,091 - +1.0
44,181 - GFF2000 0.14 +0.4
44,181 - GFF2000 0.14 -0.4
44,366 + GFF2000 0.24 +0.4
44,366 + GFF2000 0.24 -0.4
44,366 + GFF2000 0.24 -1.2
44,366 + GFF2000 0.24 -0.9
44,366 + GFF2000 0.24 -0.1
44,366 + GFF2000 0.24 -0.6
44,367 - GFF2000 0.24 -0.2
44,367 - GFF2000 0.24 -0.0
44,367 - GFF2000 0.24 -0.7
44,367 - GFF2000 0.24 +0.2
44,367 - GFF2000 0.24 -0.2
44,367 - GFF2000 0.24 +0.3
44,367 - GFF2000 0.24 +0.0
44,367 - GFF2000 0.24 -0.4
44,367 - GFF2000 0.24 -0.2
44,367 - GFF2000 0.24 -0.8
44,411 + GFF2000 0.26 -0.9
44,411 + GFF2000 0.26 -1.1
44,412 - GFF2000 0.26 -0.2
44,412 - GFF2000 0.26 -0.1
44,777 + GFF2000 0.45 +0.1
44,777 + GFF2000 0.45 -0.1
44,778 - GFF2000 0.45 -2.5
44,832 - GFF2000 0.48 -0.1
44,832 - GFF2000 0.48 -0.0
44,873 + GFF2000 0.50 +1.0
44,873 + GFF2000 0.50 +0.4
44,873 + GFF2000 0.50 -0.2
44,874 - GFF2000 0.51 +0.2
45,005 + GFF2000 0.57 -0.6
45,005 + GFF2000 0.57 -0.0
45,005 + GFF2000 0.57 -0.3
45,006 - GFF2000 0.58 -0.6
45,006 - GFF2000 0.58 +0.2
45,044 + GFF2000 0.60 -1.5
45,044 + GFF2000 0.60 -1.2
45,044 + GFF2000 0.60 -0.4
45,044 + GFF2000 0.60 -1.0
45,045 - GFF2000 0.60 +0.3
45,266 + GFF2000 0.71 -0.0
45,266 + GFF2000 0.71 -0.2
45,266 + GFF2000 0.71 -0.4
45,306 - GFF2000 0.73 +1.8
45,371 + GFF2000 0.77 -0.5
45,371 + GFF2000 0.77 -0.1
45,371 + GFF2000 0.77 -0.2
45,371 + GFF2000 0.77 -1.0
45,372 - GFF2000 0.77 -0.4
45,372 - GFF2000 0.77 -0.7
45,372 - GFF2000 0.77 +0.4
45,372 - GFF2000 0.77 -0.2
45,437 + GFF2000 0.80 -0.7
45,437 + GFF2000 0.80 -1.2
45,437 + GFF2000 0.80 -1.4
45,779 + +0.6
45,779 + -0.1
45,779 + -0.9
45,779 + -0.7
45,779 + +0.0
45,779 + -0.4
45,779 + -1.0
45,779 + +0.4
45,779 + -0.6
45,779 + +1.8
45,779 + -0.1
45,779 + +0.2
45,780 + -0.7
45,780 - -0.7
45,780 - +0.2
45,780 - -0.0
45,780 - -1.0
45,780 - +0.4
45,780 - +1.3
45,780 - +0.2
45,826 + -0.5
45,826 + +0.5
45,826 + -0.6
45,826 + -1.6
45,827 - -0.0
45,828 - -1.1
46,294 + GFF2001 0.66 -0.2
46,294 + GFF2001 0.66 -0.2
46,294 + GFF2001 0.66 +1.0
46,294 + GFF2001 0.66 -0.1
46,294 + GFF2001 0.66 +1.4
46,294 + GFF2001 0.66 -0.4
46,295 - GFF2001 0.66 -0.3
46,295 - GFF2001 0.66 +1.0
46,295 - GFF2001 0.66 +1.1
46,295 - GFF2001 0.66 +0.4
46,295 - GFF2001 0.66 +0.8
46,405 + GFF2001 0.82 +1.8
46,597 + -1.4
46,598 - -0.7
46,598 - -0.4
46,598 - -0.4
46,727 - GFF2002 0.43 -1.2
46,727 - GFF2002 0.43 -0.4

Or see this region's nucleotide sequence