Strain Fitness in Variovorax sp. SCN45 around GFF1901

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1900 and GFF1901 are separated by 158 nucleotidesGFF1901 and GFF1902 are separated by 29 nucleotides GFF1900 - Transcriptional regulator, LysR family, at 577,892 to 578,809 GFF1900 GFF1901 - no description, at 578,968 to 579,612 GFF1901 GFF1902 - hypothetical protein, at 579,642 to 581,852 GFF1902 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1at 578.181 kb on - strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.666 kb on + strand, within GFF1900at 578.667 kb on - strand, within GFF1900at 578.667 kb on - strand, within GFF1900at 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.729 kb on + strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.730 kb on - strandat 578.737 kb on + strandat 578.737 kb on + strandat 578.737 kb on + strandat 578.737 kb on + strandat 578.853 kb on + strandat 578.893 kb on - strandat 578.893 kb on - strandat 578.948 kb on + strandat 578.963 kb on + strandat 578.963 kb on + strandat 578.964 kb on - strandat 578.964 kb on - strandat 578.964 kb on - strandat 578.964 kb on - strandat 578.965 kb on + strandat 578.965 kb on + strandat 578.965 kb on + strandat 578.965 kb on + strandat 578.965 kb on + strandat 578.965 kb on + strandat 578.966 kb on - strandat 578.966 kb on - strandat 578.966 kb on - strandat 578.966 kb on - strandat 578.966 kb on - strandat 578.966 kb on - strandat 579.288 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.442 kb on + strand, within GFF1901at 579.443 kb on - strand, within GFF1901at 579.443 kb on - strand, within GFF1901at 579.443 kb on - strand, within GFF1901at 579.443 kb on - strand, within GFF1901at 579.443 kb on - strand, within GFF1901at 579.670 kb on - strandat 579.721 kb on - strandat 579.721 kb on - strandat 579.735 kb on + strandat 579.736 kb on - strandat 579.902 kb on + strand, within GFF1902at 579.943 kb on + strand, within GFF1902at 579.943 kb on + strand, within GFF1902at 579.943 kb on + strand, within GFF1902at 579.966 kb on + strand, within GFF1902at 580.022 kb on + strand, within GFF1902at 580.077 kb on + strand, within GFF1902at 580.077 kb on + strand, within GFF1902at 580.077 kb on + strand, within GFF1902at 580.078 kb on - strand, within GFF1902at 580.329 kb on + strand, within GFF1902at 580.329 kb on + strand, within GFF1902at 580.330 kb on - strand, within GFF1902at 580.330 kb on - strand, within GFF1902at 580.386 kb on + strand, within GFF1902at 580.452 kb on + strand, within GFF1902at 580.452 kb on + strand, within GFF1902at 580.452 kb on + strand, within GFF1902at 580.452 kb on + strand, within GFF1902at 580.452 kb on + strand, within GFF1902at 580.453 kb on - strand, within GFF1902at 580.453 kb on - strand, within GFF1902at 580.453 kb on - strand, within GFF1902at 580.453 kb on - strand, within GFF1902at 580.453 kb on - strand, within GFF1902at 580.453 kb on - strand, within GFF1902

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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578,181 - GFF1900 0.31 +0.5
578,318 + GFF1900 0.46 -0.1
578,318 + GFF1900 0.46 -0.3
578,318 + GFF1900 0.46 -0.2
578,319 - GFF1900 0.47 +0.7
578,319 - GFF1900 0.47 -0.8
578,319 - GFF1900 0.47 +0.0
578,319 - GFF1900 0.47 -0.1
578,319 - GFF1900 0.47 -0.7
578,319 - GFF1900 0.47 -0.6
578,666 + GFF1900 0.84 -0.8
578,667 - GFF1900 0.84 +0.6
578,667 - GFF1900 0.84 +1.4
578,729 + -0.1
578,729 + +1.7
578,729 + -0.3
578,729 + +0.2
578,729 + +0.1
578,729 + -0.6
578,729 + +0.1
578,729 + -0.2
578,729 + +0.5
578,729 + +0.3
578,729 + -0.1
578,729 + -0.6
578,729 + +1.4
578,729 + +1.5
578,730 - -0.5
578,730 - +0.1
578,730 - -0.6
578,730 - -1.2
578,730 - +0.6
578,730 - -0.3
578,730 - -0.2
578,737 + +0.1
578,737 + -0.4
578,737 + -1.0
578,737 + +0.1
578,853 + -2.6
578,893 - -2.4
578,893 - +0.2
578,948 + -0.7
578,963 + +0.7
578,963 + -1.6
578,964 - -0.4
578,964 - +0.8
578,964 - +0.1
578,964 - -0.9
578,965 + +0.1
578,965 + +0.1
578,965 + -0.1
578,965 + +0.0
578,965 + +0.7
578,965 + +0.3
578,966 - -0.9
578,966 - +0.9
578,966 - +0.7
578,966 - -0.1
578,966 - -1.1
578,966 - -0.5
579,288 + GFF1901 0.50 -0.7
579,442 + GFF1901 0.73 -1.3
579,442 + GFF1901 0.73 -1.3
579,442 + GFF1901 0.73 -0.3
579,442 + GFF1901 0.73 -0.8
579,442 + GFF1901 0.73 -1.1
579,442 + GFF1901 0.73 -0.4
579,443 - GFF1901 0.74 -1.7
579,443 - GFF1901 0.74 -0.1
579,443 - GFF1901 0.74 +0.7
579,443 - GFF1901 0.74 +0.2
579,443 - GFF1901 0.74 -0.2
579,670 - +0.4
579,721 - -0.5
579,721 - -0.6
579,735 + -0.6
579,736 - -1.2
579,902 + GFF1902 0.12 -0.7
579,943 + GFF1902 0.14 -2.0
579,943 + GFF1902 0.14 +0.5
579,943 + GFF1902 0.14 -0.3
579,966 + GFF1902 0.15 +0.4
580,022 + GFF1902 0.17 -0.1
580,077 + GFF1902 0.20 +0.3
580,077 + GFF1902 0.20 -0.0
580,077 + GFF1902 0.20 -0.1
580,078 - GFF1902 0.20 -1.1
580,329 + GFF1902 0.31 -0.4
580,329 + GFF1902 0.31 -0.7
580,330 - GFF1902 0.31 -0.3
580,330 - GFF1902 0.31 +1.0
580,386 + GFF1902 0.34 -0.3
580,452 + GFF1902 0.37 -0.6
580,452 + GFF1902 0.37 -0.5
580,452 + GFF1902 0.37 -1.1
580,452 + GFF1902 0.37 +0.9
580,452 + GFF1902 0.37 -1.0
580,453 - GFF1902 0.37 +0.4
580,453 - GFF1902 0.37 -0.3
580,453 - GFF1902 0.37 +0.1
580,453 - GFF1902 0.37 +0.0
580,453 - GFF1902 0.37 -0.6
580,453 - GFF1902 0.37 -0.4

Or see this region's nucleotide sequence