Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1879 and GFF1880 are separated by 279 nucleotides GFF1880 and GFF1881 overlap by 4 nucleotides
GFF1879 - dicarboxylic acid transporter PcaT, at 551,755 to 553,101
GFF1879
GFF1880 - Previously called glutamate synthase [NADPH] small chain, at 553,381 to 555,180
GFF1880
GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003
GFF1881
Position (kb) 553
554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 552.566 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.717 kb on - strand, within GFF1879 at 552.717 kb on - strand, within GFF1879 at 552.923 kb on + strand, within GFF1879 at 552.923 kb on + strand, within GFF1879 at 552.923 kb on + strand, within GFF1879 at 552.923 kb on + strand, within GFF1879 at 552.924 kb on - strand, within GFF1879 at 552.924 kb on - strand, within GFF1879 at 552.941 kb on + strand, within GFF1879 at 552.947 kb on + strand, within GFF1879 at 552.948 kb on - strand, within GFF1879 at 552.948 kb on - strand, within GFF1879 at 552.948 kb on - strand, within GFF1879 at 552.948 kb on - strand, within GFF1879 at 553.028 kb on + strand at 553.028 kb on + strand at 553.029 kb on - strand at 553.029 kb on - strand at 553.029 kb on - strand at 553.029 kb on - strand at 553.029 kb on - strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.214 kb on + strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.215 kb on - strand at 553.225 kb on - strand at 553.242 kb on + strand at 553.242 kb on + strand at 553.243 kb on - strand at 553.318 kb on + strand at 553.319 kb on - strand at 553.319 kb on - strand at 553.375 kb on + strand at 553.375 kb on + strand at 553.375 kb on + strand at 553.375 kb on + strand at 553.376 kb on - strand at 553.376 kb on - strand at 553.411 kb on + strand at 553.412 kb on - strand at 553.412 kb on - strand at 553.439 kb on - strand at 553.471 kb on + strand at 553.471 kb on + strand at 553.472 kb on - strand at 553.472 kb on - strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.475 kb on + strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.476 kb on - strand at 553.498 kb on + strand at 553.510 kb on + strand at 553.510 kb on + strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.511 kb on - strand at 553.894 kb on + strand, within GFF1880 at 553.894 kb on + strand, within GFF1880 at 553.894 kb on + strand, within GFF1880 at 553.894 kb on + strand, within GFF1880 at 553.895 kb on - strand, within GFF1880 at 553.895 kb on - strand, within GFF1880 at 554.356 kb on + strand, within GFF1880 at 554.356 kb on + strand, within GFF1880 at 554.357 kb on - strand, within GFF1880 at 554.659 kb on + strand, within GFF1880 at 554.660 kb on - strand, within GFF1880 at 554.660 kb on - strand, within GFF1880 at 554.722 kb on + strand, within GFF1880 at 554.723 kb on - strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.753 kb on - strand, within GFF1880 at 554.753 kb on - strand, within GFF1880 at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.678 kb on + strand, within GFF1881 at 555.678 kb on + strand, within GFF1881 at 555.678 kb on + strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.849 kb on + strand, within GFF1881 at 555.850 kb on - strand, within GFF1881 at 555.850 kb on - strand, within GFF1881 at 555.876 kb on + strand, within GFF1881 at 555.876 kb on + strand, within GFF1881 at 555.921 kb on + strand, within GFF1881 at 555.922 kb on - strand, within GFF1881 at 555.922 kb on - strand, within GFF1881 at 556.101 kb on + strand, within GFF1881 at 556.101 kb on + strand, within GFF1881 at 556.102 kb on - strand, within GFF1881
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 552,566 + GFF1879 0.60 -0.3 552,620 + GFF1879 0.64 -0.1 552,620 + GFF1879 0.64 -0.9 552,620 + GFF1879 0.64 -0.1 552,620 + GFF1879 0.64 +0.7 552,620 + GFF1879 0.64 +0.4 552,620 + GFF1879 0.64 -0.9 552,620 + GFF1879 0.64 -0.5 552,621 - GFF1879 0.64 -0.5 552,621 - GFF1879 0.64 -0.9 552,621 - GFF1879 0.64 +0.1 552,621 - GFF1879 0.64 +0.1 552,621 - GFF1879 0.64 -1.9 552,717 - GFF1879 0.71 -0.2 552,717 - GFF1879 0.71 -1.6 552,923 + GFF1879 0.87 -1.5 552,923 + GFF1879 0.87 -0.3 552,923 + GFF1879 0.87 -0.4 552,923 + GFF1879 0.87 +0.5 552,924 - GFF1879 0.87 +0.4 552,924 - GFF1879 0.87 +0.1 552,941 + GFF1879 0.88 -0.2 552,947 + GFF1879 0.88 -1.3 552,948 - GFF1879 0.89 -0.5 552,948 - GFF1879 0.89 -0.5 552,948 - GFF1879 0.89 +0.1 552,948 - GFF1879 0.89 -0.6 553,028 + -1.5 553,028 + -0.5 553,029 - +0.1 553,029 - -0.2 553,029 - +1.7 553,029 - +0.7 553,029 - -0.5 553,214 + +0.6 553,214 + -0.9 553,214 + -0.5 553,214 + +0.4 553,214 + -0.2 553,214 + +0.1 553,214 + -0.5 553,214 + -0.5 553,214 + -0.4 553,214 + -0.1 553,214 + -0.6 553,214 + +1.7 553,215 - +1.5 553,215 - -0.9 553,215 - -0.3 553,215 - +0.1 553,215 - -0.1 553,215 - +0.0 553,215 - +1.1 553,225 - -0.5 553,242 + -0.6 553,242 + +0.1 553,243 - -0.3 553,318 + -0.1 553,319 - +1.2 553,319 - -0.4 553,375 + -0.5 553,375 + -0.4 553,375 + -0.7 553,375 + -1.7 553,376 - -0.5 553,376 - -0.2 553,411 + -1.0 553,412 - -0.6 553,412 - -1.1 553,439 - -0.8 553,471 + +0.4 553,471 + +0.1 553,472 - +0.2 553,472 - +0.9 553,475 + -0.6 553,475 + -0.3 553,475 + -0.4 553,475 + -2.0 553,475 + -0.4 553,475 + -0.7 553,475 + -0.1 553,475 + +0.5 553,475 + -1.4 553,475 + +0.5 553,475 + -0.3 553,476 - -0.8 553,476 - -0.2 553,476 - -0.0 553,476 - -1.4 553,476 - +0.1 553,476 - -0.5 553,476 - -0.3 553,476 - +0.0 553,498 + -0.4 553,510 + +0.2 553,510 + -0.9 553,511 - +0.3 553,511 - -0.3 553,511 - +1.2 553,511 - +0.9 553,511 - -0.1 553,511 - -0.1 553,511 - -0.7 553,511 - -0.1 553,511 - -1.7 553,511 - +0.7 553,894 + GFF1880 0.28 -1.3 553,894 + GFF1880 0.28 +0.3 553,894 + GFF1880 0.28 -0.3 553,894 + GFF1880 0.28 -0.6 553,895 - GFF1880 0.29 +0.4 553,895 - GFF1880 0.29 +0.0 554,356 + GFF1880 0.54 -1.1 554,356 + GFF1880 0.54 -0.3 554,357 - GFF1880 0.54 -0.7 554,659 + GFF1880 0.71 +0.5 554,660 - GFF1880 0.71 -0.6 554,660 - GFF1880 0.71 -0.9 554,722 + GFF1880 0.74 -0.9 554,723 - GFF1880 0.75 -0.6 554,752 + GFF1880 0.76 -0.3 554,752 + GFF1880 0.76 +1.5 554,752 + GFF1880 0.76 -0.1 554,753 - GFF1880 0.76 -1.0 554,753 - GFF1880 0.76 -0.9 555,022 + +0.1 555,022 + -1.1 555,022 + -0.1 555,022 + -1.1 555,022 + -0.0 555,022 + -0.4 555,022 + +0.7 555,022 + -0.2 555,023 - -0.7 555,023 - -0.1 555,023 - -1.4 555,023 - -0.3 555,023 - -0.1 555,023 - -0.7 555,023 - -1.3 555,023 - +0.1 555,023 - -0.8 555,023 - +0.2 555,023 - -1.9 555,678 + GFF1881 0.27 +0.1 555,678 + GFF1881 0.27 -0.3 555,678 + GFF1881 0.27 -0.7 555,679 - GFF1881 0.27 +0.5 555,679 - GFF1881 0.27 +1.7 555,679 - GFF1881 0.27 +2.0 555,679 - GFF1881 0.27 -0.6 555,679 - GFF1881 0.27 +0.1 555,679 - GFF1881 0.27 -0.7 555,679 - GFF1881 0.27 -0.4 555,679 - GFF1881 0.27 +0.1 555,849 + GFF1881 0.37 -0.7 555,850 - GFF1881 0.37 +0.3 555,850 - GFF1881 0.37 -0.3 555,876 + GFF1881 0.38 -0.2 555,876 + GFF1881 0.38 -0.8 555,921 + GFF1881 0.41 -1.4 555,922 - GFF1881 0.41 -0.9 555,922 - GFF1881 0.41 -2.4 556,101 + GFF1881 0.51 +0.1 556,101 + GFF1881 0.51 +0.5 556,102 - GFF1881 0.51 +1.3
Or see this region's nucleotide sequence