Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1602 and GFF1603 overlap by 4 nucleotides GFF1603 and GFF1604 are separated by 1 nucleotides GFF1604 and GFF1605 are separated by 108 nucleotides GFF1605 and GFF1606 are separated by 3 nucleotides
GFF1602 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 200,243 to 200,965
GFF1602
GFF1603 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 200,962 to 201,729
GFF1603
GFF1604 - Prolidase (EC 3.4.13.9), at 201,731 to 202,996
GFF1604
GFF1605 - no description, at 203,105 to 203,686
GFF1605
GFF1606 - Cys-tRNA(Pro) deacylase YbaK, at 203,690 to 205,276
GFF1606
Position (kb) 201
202
203 Strain fitness (log2 ratio) -1
0
1 at 200.985 kb on - strand at 200.985 kb on - strand at 201.042 kb on - strand, within GFF1603 at 201.758 kb on + strand at 202.302 kb on + strand, within GFF1604 at 202.303 kb on - strand, within GFF1604 at 202.303 kb on - strand, within GFF1604 at 202.320 kb on + strand, within GFF1604 at 202.320 kb on + strand, within GFF1604 at 202.320 kb on + strand, within GFF1604 at 202.321 kb on - strand, within GFF1604 at 202.321 kb on - strand, within GFF1604 at 202.321 kb on - strand, within GFF1604 at 202.321 kb on - strand, within GFF1604 at 202.432 kb on + strand, within GFF1604 at 202.433 kb on - strand, within GFF1604 at 202.433 kb on - strand, within GFF1604 at 202.851 kb on + strand, within GFF1604 at 202.988 kb on + strand at 203.023 kb on - strand at 203.045 kb on - strand at 203.075 kb on + strand at 203.114 kb on - strand at 203.114 kb on - strand at 203.263 kb on + strand, within GFF1605 at 203.264 kb on - strand, within GFF1605 at 203.584 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.636 kb on + strand at 203.710 kb on - strand at 203.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 200,985 - -0.0 200,985 - +1.3 201,042 - GFF1603 0.10 -0.7 201,758 + -0.8 202,302 + GFF1604 0.45 -0.6 202,303 - GFF1604 0.45 -1.2 202,303 - GFF1604 0.45 -0.6 202,320 + GFF1604 0.47 -0.8 202,320 + GFF1604 0.47 -0.0 202,320 + GFF1604 0.47 -0.3 202,321 - GFF1604 0.47 -0.2 202,321 - GFF1604 0.47 -0.6 202,321 - GFF1604 0.47 +1.0 202,321 - GFF1604 0.47 -0.4 202,432 + GFF1604 0.55 -0.5 202,433 - GFF1604 0.55 -0.4 202,433 - GFF1604 0.55 +1.1 202,851 + GFF1604 0.88 -0.9 202,988 + -0.0 203,023 - -0.2 203,045 - -0.5 203,075 + -1.3 203,114 - -0.5 203,114 - -0.5 203,263 + GFF1605 0.27 -0.2 203,264 - GFF1605 0.27 -0.6 203,584 + GFF1605 0.82 -0.3 203,612 + GFF1605 0.87 +0.3 203,612 + GFF1605 0.87 -0.2 203,612 + GFF1605 0.87 +1.3 203,612 + GFF1605 0.87 -0.9 203,612 + GFF1605 0.87 -0.0 203,612 + GFF1605 0.87 -0.6 203,613 - GFF1605 0.87 +0.1 203,613 - GFF1605 0.87 -0.0 203,613 - GFF1605 0.87 -0.1 203,636 + +0.2 203,710 - +1.7 203,710 - +0.3
Or see this region's nucleotide sequence