Strain Fitness in Variovorax sp. SCN45 around GFF151

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF149 and GFF151 are separated by 21 nucleotidesGFF151 and GFF152 are separated by 27 nucleotidesGFF152 and GFF153 overlap by 4 nucleotides GFF149 - Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form (EC 2.3.1.164), at 177,637 to 178,797 GFF149 GFF151 - FIG00460174: hypothetical protein, at 178,819 to 179,706 GFF151 GFF152 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 179,734 to 180,678 GFF152 GFF153 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 180,675 to 181,511 GFF153 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.938 kb on - strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.342 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.762 kb on + strandat 178.763 kb on - strandat 178.763 kb on - strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.930 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.236 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.726 kb on + strandat 179.727 kb on - strandat 179.727 kb on - strandat 179.813 kb on + strandat 179.814 kb on - strandat 180.232 kb on + strand, within GFF152at 180.232 kb on + strand, within GFF152at 180.233 kb on - strand, within GFF152at 180.271 kb on + strand, within GFF152at 180.272 kb on - strand, within GFF152at 180.272 kb on - strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.643 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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177,833 - GFF149 0.17 -0.5
177,833 - GFF149 0.17 -0.7
177,833 - GFF149 0.17 +0.6
177,844 + GFF149 0.18 +0.8
177,844 + GFF149 0.18 -1.3
177,844 + GFF149 0.18 -0.3
177,844 + GFF149 0.18 -0.1
177,844 + GFF149 0.18 -0.1
177,938 - GFF149 0.26 -0.1
178,071 + GFF149 0.37 -0.9
178,071 + GFF149 0.37 -0.1
178,072 - GFF149 0.37 -0.8
178,072 - GFF149 0.37 +1.3
178,072 - GFF149 0.37 +0.3
178,342 + GFF149 0.61 -1.0
178,537 + GFF149 0.78 +0.6
178,537 + GFF149 0.78 -0.3
178,537 + GFF149 0.78 -1.1
178,538 - GFF149 0.78 -0.2
178,538 - GFF149 0.78 +0.1
178,538 - GFF149 0.78 -0.1
178,538 - GFF149 0.78 +0.3
178,538 - GFF149 0.78 -0.6
178,538 - GFF149 0.78 +0.2
178,762 + -0.2
178,763 - -0.8
178,763 - -0.4
178,786 + -0.1
178,786 + -0.1
178,786 + +0.3
178,786 + -0.6
178,787 - +0.1
178,787 - -0.2
178,787 - -1.0
178,787 - +0.1
178,787 - +0.5
178,795 + +0.0
178,795 + -0.9
178,795 + -0.7
178,795 + -0.8
178,795 + -0.7
178,796 - -0.7
178,796 - +0.3
178,796 - -0.1
178,796 - -0.1
178,796 - +0.2
178,796 - +0.4
178,876 + -0.1
178,876 + +0.7
178,876 + -1.2
178,876 + +0.5
178,876 + -0.8
178,876 + -0.0
178,876 + -0.4
178,876 + +0.0
178,877 - -0.7
178,877 - -0.2
178,877 - -0.2
178,877 - -0.8
178,877 - -0.2
178,900 + -0.4
178,900 + -0.9
178,900 + -0.9
178,900 + -2.0
178,900 + -0.5
178,900 + -0.2
178,900 + +0.3
178,901 - -0.1
178,901 - -0.6
178,901 - -0.1
178,901 - +0.3
178,930 + GFF151 0.12 -0.1
178,939 + GFF151 0.14 +0.8
178,939 + GFF151 0.14 +0.5
178,939 + GFF151 0.14 -0.4
178,939 + GFF151 0.14 -1.0
178,939 + GFF151 0.14 -0.9
178,939 + GFF151 0.14 -0.6
178,940 - GFF151 0.14 -1.2
178,940 - GFF151 0.14 +0.1
178,940 - GFF151 0.14 -1.0
178,940 - GFF151 0.14 -0.5
178,940 - GFF151 0.14 -0.0
178,940 - GFF151 0.14 -0.8
178,977 + GFF151 0.18 -0.9
178,977 + GFF151 0.18 -0.8
178,977 + GFF151 0.18 -1.0
178,977 + GFF151 0.18 -0.7
178,977 + GFF151 0.18 +1.3
178,977 + GFF151 0.18 -1.1
178,978 - GFF151 0.18 -0.2
178,978 - GFF151 0.18 -1.5
178,978 - GFF151 0.18 -1.2
178,978 - GFF151 0.18 -0.9
178,978 - GFF151 0.18 +1.0
178,978 - GFF151 0.18 -0.4
178,978 - GFF151 0.18 +1.1
179,027 - GFF151 0.23 -0.6
179,027 - GFF151 0.23 -0.8
179,138 + GFF151 0.36 +0.5
179,138 + GFF151 0.36 -0.3
179,155 + GFF151 0.38 -0.7
179,155 + GFF151 0.38 -0.5
179,156 - GFF151 0.38 -0.4
179,156 - GFF151 0.38 -0.1
179,156 - GFF151 0.38 -0.3
179,236 + GFF151 0.47 -1.1
179,491 + GFF151 0.76 -0.4
179,491 + GFF151 0.76 -1.0
179,491 + GFF151 0.76 -0.8
179,491 + GFF151 0.76 -0.7
179,491 + GFF151 0.76 -1.5
179,491 + GFF151 0.76 +0.1
179,491 + GFF151 0.76 -0.2
179,491 + GFF151 0.76 -1.6
179,491 + GFF151 0.76 -0.4
179,494 + GFF151 0.76 -0.4
179,494 + GFF151 0.76 -0.2
179,494 + GFF151 0.76 -1.1
179,494 + GFF151 0.76 +0.3
179,494 + GFF151 0.76 -0.5
179,494 + GFF151 0.76 +0.7
179,495 - GFF151 0.76 -0.1
179,495 - GFF151 0.76 +0.5
179,495 - GFF151 0.76 +0.2
179,495 - GFF151 0.76 -0.5
179,495 - GFF151 0.76 -0.7
179,495 - GFF151 0.76 -0.7
179,495 - GFF151 0.76 -0.2
179,726 + +0.8
179,727 - -0.3
179,727 - -0.3
179,813 + -1.5
179,814 - -1.0
180,232 + GFF152 0.53 +0.1
180,232 + GFF152 0.53 -0.2
180,233 - GFF152 0.53 -0.6
180,271 + GFF152 0.57 +0.4
180,272 - GFF152 0.57 +0.0
180,272 - GFF152 0.57 +2.3
180,367 + GFF152 0.67 -0.7
180,367 + GFF152 0.67 -1.7
180,367 + GFF152 0.67 -0.4
180,368 - GFF152 0.67 -0.4
180,368 - GFF152 0.67 +0.3
180,368 - GFF152 0.67 -0.6
180,368 - GFF152 0.67 +0.1
180,578 + GFF152 0.89 +0.9
180,578 + GFF152 0.89 +0.2
180,578 + GFF152 0.89 -0.4
180,579 - GFF152 0.89 -0.1
180,579 - GFF152 0.89 -0.3
180,579 - GFF152 0.89 -0.7
180,579 - GFF152 0.89 +0.0
180,610 + -0.4
180,610 + +0.3
180,610 + -0.5
180,610 + -0.3
180,610 + -0.7
180,611 - -0.2
180,611 - +0.2
180,611 - -0.5
180,611 - -0.7
180,643 + -0.9

Or see this region's nucleotide sequence