Strain Fitness in Variovorax sp. SCN45 around GFF1405

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1403 and GFF1404 overlap by 4 nucleotidesGFF1404 and GFF1405 are separated by 102 nucleotidesGFF1405 and GFF1406 overlap by 4 nucleotidesGFF1406 and GFF1407 are separated by 59 nucleotidesGFF1407 and GFF1408 are separated by 49 nucleotides GFF1403 - MATE efflux family protein, at 752,055 to 753,473 GFF1403 GFF1404 - hypothetical protein, at 753,470 to 754,027 GFF1404 GFF1405 - hypothetical protein, at 754,130 to 754,546 GFF1405 GFF1406 - hypothetical protein, at 754,543 to 754,908 GFF1406 GFF1407 - hypothetical protein, at 754,968 to 755,483 GFF1407 GFF1408 - hypothetical protein, at 755,533 to 755,859 GFF1408 Position (kb) 754 755Strain fitness (log2 ratio) -2 -1 0 1 2at 753.186 kb on + strand, within GFF1403at 753.186 kb on + strand, within GFF1403at 753.186 kb on + strand, within GFF1403at 753.187 kb on - strand, within GFF1403at 753.187 kb on - strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.636 kb on + strand, within GFF1404at 753.636 kb on + strand, within GFF1404at 753.637 kb on - strand, within GFF1404at 753.637 kb on - strand, within GFF1404at 753.910 kb on - strand, within GFF1404at 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.092 kb on + strandat 754.092 kb on + strandat 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.556 kb on + strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.745 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 755.093 kb on - strand, within GFF1407at 755.093 kb on - strand, within GFF1407at 755.093 kb on - strand, within GFF1407at 755.190 kb on + strand, within GFF1407at 755.191 kb on - strand, within GFF1407at 755.494 kb on + strandat 755.495 kb on - strandat 755.495 kb on - strandat 755.495 kb on - strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.535 kb on - strandat 755.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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753,186 + GFF1403 0.80 -0.7
753,186 + GFF1403 0.80 -0.1
753,186 + GFF1403 0.80 -1.1
753,187 - GFF1403 0.80 -0.3
753,187 - GFF1403 0.80 +0.5
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 -0.8
753,301 + GFF1403 0.88 +0.3
753,301 + GFF1403 0.88 -0.4
753,301 + GFF1403 0.88 +0.1
753,301 + GFF1403 0.88 -0.1
753,301 + GFF1403 0.88 -0.4
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 -0.3
753,301 + GFF1403 0.88 +0.5
753,301 + GFF1403 0.88 +1.0
753,302 - GFF1403 0.88 -0.1
753,302 - GFF1403 0.88 +1.3
753,302 - GFF1403 0.88 -1.7
753,302 - GFF1403 0.88 -0.7
753,302 - GFF1403 0.88 -0.5
753,302 - GFF1403 0.88 +0.5
753,302 - GFF1403 0.88 -0.7
753,302 - GFF1403 0.88 +1.5
753,302 - GFF1403 0.88 -0.0
753,302 - GFF1403 0.88 -0.1
753,302 - GFF1403 0.88 -0.4
753,302 - GFF1403 0.88 -0.4
753,302 - GFF1403 0.88 +0.2
753,302 - GFF1403 0.88 +1.9
753,302 - GFF1403 0.88 -0.3
753,302 - GFF1403 0.88 -1.0
753,636 + GFF1404 0.30 -0.4
753,636 + GFF1404 0.30 +0.9
753,637 - GFF1404 0.30 -0.2
753,637 - GFF1404 0.30 +0.9
753,910 - GFF1404 0.79 +0.4
754,087 + +0.9
754,087 + -0.9
754,087 + +0.6
754,087 + -1.5
754,087 + +0.3
754,088 - -0.9
754,088 - +0.2
754,088 - -1.2
754,088 - -2.4
754,092 + -1.4
754,092 + -0.6
754,422 + GFF1405 0.70 -1.2
754,422 + GFF1405 0.70 -1.4
754,422 + GFF1405 0.70 -0.1
754,422 + GFF1405 0.70 -0.8
754,422 + GFF1405 0.70 -0.6
754,422 + GFF1405 0.70 -0.4
754,422 + GFF1405 0.70 -0.0
754,422 + GFF1405 0.70 -0.5
754,422 + GFF1405 0.70 -0.1
754,422 + GFF1405 0.70 +0.9
754,422 + GFF1405 0.70 -0.7
754,422 + GFF1405 0.70 +0.5
754,422 + GFF1405 0.70 +1.5
754,422 + GFF1405 0.70 -0.6
754,422 + GFF1405 0.70 -0.0
754,422 + GFF1405 0.70 -0.1
754,422 + GFF1405 0.70 +0.3
754,422 + GFF1405 0.70 -0.6
754,422 + GFF1405 0.70 +0.2
754,422 + GFF1405 0.70 +0.2
754,422 + GFF1405 0.70 +0.5
754,422 + GFF1405 0.70 +1.0
754,423 - GFF1405 0.70 +0.6
754,423 - GFF1405 0.70 +1.1
754,423 - GFF1405 0.70 +0.8
754,423 - GFF1405 0.70 +0.1
754,423 - GFF1405 0.70 -0.5
754,423 - GFF1405 0.70 +1.3
754,423 - GFF1405 0.70 +0.1
754,423 - GFF1405 0.70 +0.1
754,423 - GFF1405 0.70 +0.6
754,423 - GFF1405 0.70 -0.9
754,423 - GFF1405 0.70 -0.1
754,423 - GFF1405 0.70 -0.5
754,423 - GFF1405 0.70 +0.5
754,423 - GFF1405 0.70 +0.1
754,423 - GFF1405 0.70 +1.5
754,423 - GFF1405 0.70 +0.0
754,556 + -0.6
754,557 - +0.8
754,557 - +0.4
754,557 - +1.5
754,557 - +0.9
754,557 - +0.9
754,557 - -0.5
754,557 - -0.3
754,557 - +0.4
754,557 - +0.6
754,745 + GFF1406 0.55 +1.3
754,802 + GFF1406 0.71 -0.8
754,802 + GFF1406 0.71 -0.8
754,802 + GFF1406 0.71 -2.0
754,802 + GFF1406 0.71 -0.9
754,802 + GFF1406 0.71 +1.3
754,803 - GFF1406 0.71 +0.2
754,803 - GFF1406 0.71 -0.3
754,803 - GFF1406 0.71 -0.0
754,803 - GFF1406 0.71 -0.4
754,803 - GFF1406 0.71 +0.3
754,803 - GFF1406 0.71 -1.2
754,803 - GFF1406 0.71 +0.1
754,803 - GFF1406 0.71 -1.4
754,803 - GFF1406 0.71 -1.1
754,803 - GFF1406 0.71 -0.9
754,803 - GFF1406 0.71 +0.7
754,865 + GFF1406 0.88 -1.2
754,865 + GFF1406 0.88 +0.1
754,865 + GFF1406 0.88 -1.7
754,865 + GFF1406 0.88 +0.1
754,865 + GFF1406 0.88 -0.3
754,865 + GFF1406 0.88 -0.5
754,865 + GFF1406 0.88 -0.2
754,865 + GFF1406 0.88 -1.2
754,866 - GFF1406 0.88 +0.1
754,866 - GFF1406 0.88 -0.0
754,866 - GFF1406 0.88 -0.1
754,866 - GFF1406 0.88 +0.4
754,866 - GFF1406 0.88 +0.2
755,093 - GFF1407 0.24 -0.5
755,093 - GFF1407 0.24 +0.4
755,093 - GFF1407 0.24 +0.1
755,190 + GFF1407 0.43 -0.1
755,191 - GFF1407 0.43 +0.1
755,494 + +0.5
755,495 - -0.1
755,495 - +0.2
755,495 - -0.7
755,534 + -0.8
755,534 + -0.5
755,534 + -1.2
755,534 + +0.1
755,535 - -0.8
755,535 - -0.2

Or see this region's nucleotide sequence