Strain Fitness in Variovorax sp. SCN45 around GFF1391

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1389 and GFF1390 overlap by 4 nucleotidesGFF1390 and GFF1391 are separated by 137 nucleotidesGFF1391 and GFF1392 are separated by 16 nucleotides GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149 GFF1389 GFF1390 - ortholog of Bordetella pertussis (BX470248) BP2750, at 737,146 to 737,775 GFF1390 GFF1391 - Uncharacterized MFS-type transporter, at 737,913 to 739,493 GFF1391 GFF1392 - Monooxygenase, flavin-binding family, at 739,510 to 740,979 GFF1392 Position (kb) 737 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2 3at 737.093 kb on + strandat 737.093 kb on + strandat 737.094 kb on - strandat 737.094 kb on - strandat 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.231 kb on - strand, within GFF1390at 737.299 kb on + strand, within GFF1390at 737.299 kb on + strand, within GFF1390at 737.848 kb on - strandat 737.848 kb on - strandat 737.848 kb on - strandat 738.138 kb on + strand, within GFF1391at 738.138 kb on + strand, within GFF1391at 738.139 kb on - strand, within GFF1391at 738.139 kb on - strand, within GFF1391at 738.139 kb on - strand, within GFF1391at 738.192 kb on + strand, within GFF1391at 738.206 kb on + strand, within GFF1391at 738.207 kb on - strand, within GFF1391at 738.207 kb on - strand, within GFF1391at 738.618 kb on + strand, within GFF1391at 738.619 kb on - strand, within GFF1391at 738.619 kb on - strand, within GFF1391at 738.804 kb on + strand, within GFF1391at 738.828 kb on + strand, within GFF1391at 738.829 kb on - strand, within GFF1391at 738.829 kb on - strand, within GFF1391at 738.865 kb on - strand, within GFF1391at 739.041 kb on + strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.042 kb on - strand, within GFF1391at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.693 kb on + strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.694 kb on - strand, within GFF1392at 739.706 kb on - strand, within GFF1392at 739.765 kb on + strand, within GFF1392at 739.765 kb on + strand, within GFF1392at 739.765 kb on + strand, within GFF1392at 739.765 kb on + strand, within GFF1392at 739.765 kb on + strand, within GFF1392at 739.766 kb on - strand, within GFF1392at 739.942 kb on + strand, within GFF1392at 739.942 kb on + strand, within GFF1392at 739.942 kb on + strand, within GFF1392at 739.942 kb on + strand, within GFF1392at 739.942 kb on + strand, within GFF1392at 739.943 kb on - strand, within GFF1392at 739.943 kb on - strand, within GFF1392at 739.943 kb on - strand, within GFF1392at 739.948 kb on + strand, within GFF1392at 739.949 kb on - strand, within GFF1392at 739.949 kb on - strand, within GFF1392at 739.991 kb on - strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.149 kb on + strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.150 kb on - strand, within GFF1392at 740.221 kb on + strand, within GFF1392at 740.222 kb on - strand, within GFF1392at 740.344 kb on + strand, within GFF1392at 740.374 kb on + strand, within GFF1392at 740.374 kb on + strand, within GFF1392at 740.375 kb on - strand, within GFF1392

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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737,093 + -0.2
737,093 + +0.3
737,094 - -1.0
737,094 - -0.7
737,227 + GFF1390 0.13 -0.1
737,227 + GFF1390 0.13 +1.0
737,227 + GFF1390 0.13 +0.5
737,227 + GFF1390 0.13 -2.7
737,227 + GFF1390 0.13 -0.5
737,227 + GFF1390 0.13 -0.0
737,228 - GFF1390 0.13 +0.2
737,228 - GFF1390 0.13 +0.1
737,228 - GFF1390 0.13 +1.1
737,228 - GFF1390 0.13 +3.5
737,230 + GFF1390 0.13 -0.7
737,230 + GFF1390 0.13 +0.3
737,230 + GFF1390 0.13 +0.2
737,230 + GFF1390 0.13 +0.5
737,231 - GFF1390 0.13 +0.3
737,299 + GFF1390 0.24 -0.5
737,299 + GFF1390 0.24 -1.5
737,848 - -0.5
737,848 - -0.9
737,848 - -2.2
738,138 + GFF1391 0.14 -0.1
738,138 + GFF1391 0.14 +0.3
738,139 - GFF1391 0.14 +0.4
738,139 - GFF1391 0.14 -0.9
738,139 - GFF1391 0.14 -1.2
738,192 + GFF1391 0.18 -0.5
738,206 + GFF1391 0.19 +0.1
738,207 - GFF1391 0.19 +0.3
738,207 - GFF1391 0.19 -0.5
738,618 + GFF1391 0.45 -2.1
738,619 - GFF1391 0.45 -0.1
738,619 - GFF1391 0.45 -0.2
738,804 + GFF1391 0.56 -0.4
738,828 + GFF1391 0.58 +0.2
738,829 - GFF1391 0.58 -1.1
738,829 - GFF1391 0.58 +1.1
738,865 - GFF1391 0.60 +0.5
739,041 + GFF1391 0.71 -0.1
739,042 - GFF1391 0.71 +1.5
739,042 - GFF1391 0.71 +0.9
739,042 - GFF1391 0.71 -1.0
739,042 - GFF1391 0.71 +1.2
739,042 - GFF1391 0.71 -0.2
739,042 - GFF1391 0.71 +0.5
739,042 - GFF1391 0.71 +0.2
739,693 + GFF1392 0.12 +1.5
739,693 + GFF1392 0.12 +0.9
739,693 + GFF1392 0.12 -0.9
739,693 + GFF1392 0.12 -0.2
739,693 + GFF1392 0.12 -0.8
739,693 + GFF1392 0.12 -0.7
739,693 + GFF1392 0.12 -0.6
739,693 + GFF1392 0.12 +0.7
739,694 - GFF1392 0.13 +0.2
739,694 - GFF1392 0.13 -1.0
739,694 - GFF1392 0.13 -0.0
739,694 - GFF1392 0.13 -0.4
739,694 - GFF1392 0.13 -0.9
739,694 - GFF1392 0.13 -0.5
739,694 - GFF1392 0.13 -0.5
739,706 - GFF1392 0.13 +0.8
739,765 + GFF1392 0.17 -0.3
739,765 + GFF1392 0.17 -0.1
739,765 + GFF1392 0.17 +0.0
739,765 + GFF1392 0.17 -0.7
739,765 + GFF1392 0.17 -0.1
739,766 - GFF1392 0.17 -0.9
739,942 + GFF1392 0.29 +0.6
739,942 + GFF1392 0.29 +0.2
739,942 + GFF1392 0.29 +0.1
739,942 + GFF1392 0.29 +0.5
739,942 + GFF1392 0.29 -0.1
739,943 - GFF1392 0.29 +0.3
739,943 - GFF1392 0.29 +0.9
739,943 - GFF1392 0.29 +0.9
739,948 + GFF1392 0.30 -0.2
739,949 - GFF1392 0.30 -0.7
739,949 - GFF1392 0.30 +1.0
739,991 - GFF1392 0.33 -1.0
740,149 + GFF1392 0.43 -0.0
740,149 + GFF1392 0.43 +0.3
740,149 + GFF1392 0.43 +1.7
740,149 + GFF1392 0.43 -0.0
740,149 + GFF1392 0.43 -0.0
740,149 + GFF1392 0.43 -0.1
740,149 + GFF1392 0.43 +1.5
740,149 + GFF1392 0.43 -0.3
740,149 + GFF1392 0.43 -0.8
740,149 + GFF1392 0.43 -1.4
740,150 - GFF1392 0.44 +0.6
740,150 - GFF1392 0.44 -0.4
740,150 - GFF1392 0.44 +0.9
740,150 - GFF1392 0.44 +0.5
740,150 - GFF1392 0.44 -0.4
740,150 - GFF1392 0.44 +0.6
740,150 - GFF1392 0.44 -0.8
740,150 - GFF1392 0.44 +0.0
740,150 - GFF1392 0.44 -2.2
740,221 + GFF1392 0.48 -0.1
740,222 - GFF1392 0.48 -0.5
740,344 + GFF1392 0.57 -1.5
740,374 + GFF1392 0.59 -0.1
740,374 + GFF1392 0.59 +0.7
740,375 - GFF1392 0.59 +2.5

Or see this region's nucleotide sequence