Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1389 and GFF1390 overlap by 4 nucleotides GFF1390 and GFF1391 are separated by 137 nucleotides
GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149
GFF1389
GFF1390 - ortholog of Bordetella pertussis (BX470248) BP2750, at 737,146 to 737,775
GFF1390
GFF1391 - Uncharacterized MFS-type transporter, at 737,913 to 739,493
GFF1391
Position (kb) 737
738 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 737.093 kb on + strand at 737.093 kb on + strand at 737.094 kb on - strand at 737.094 kb on - strand at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.231 kb on - strand, within GFF1390 at 737.299 kb on + strand, within GFF1390 at 737.299 kb on + strand, within GFF1390 at 737.848 kb on - strand at 737.848 kb on - strand at 737.848 kb on - strand at 738.138 kb on + strand, within GFF1391 at 738.138 kb on + strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.192 kb on + strand, within GFF1391 at 738.206 kb on + strand, within GFF1391 at 738.207 kb on - strand, within GFF1391 at 738.207 kb on - strand, within GFF1391 at 738.618 kb on + strand, within GFF1391 at 738.619 kb on - strand, within GFF1391 at 738.619 kb on - strand, within GFF1391
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 736,166 + GFF1389 0.40 +0.2 736,166 + GFF1389 0.40 -0.3 736,166 + GFF1389 0.40 -0.2 736,412 + GFF1389 0.55 +0.1 736,412 + GFF1389 0.55 +0.1 736,413 - GFF1389 0.55 -0.4 736,413 - GFF1389 0.55 +0.4 736,694 + GFF1389 0.72 +0.5 736,694 + GFF1389 0.72 -0.3 736,694 + GFF1389 0.72 +0.2 736,694 + GFF1389 0.72 +0.1 736,695 - GFF1389 0.72 -0.1 736,695 - GFF1389 0.72 -0.4 736,695 - GFF1389 0.72 -1.4 737,093 + -0.2 737,093 + +0.3 737,094 - -1.0 737,094 - -0.7 737,227 + GFF1390 0.13 -0.1 737,227 + GFF1390 0.13 +1.0 737,227 + GFF1390 0.13 +0.5 737,227 + GFF1390 0.13 -2.7 737,227 + GFF1390 0.13 -0.5 737,227 + GFF1390 0.13 -0.0 737,228 - GFF1390 0.13 +0.2 737,228 - GFF1390 0.13 +0.1 737,228 - GFF1390 0.13 +1.1 737,228 - GFF1390 0.13 +3.5 737,230 + GFF1390 0.13 -0.7 737,230 + GFF1390 0.13 +0.3 737,230 + GFF1390 0.13 +0.2 737,230 + GFF1390 0.13 +0.5 737,231 - GFF1390 0.13 +0.3 737,299 + GFF1390 0.24 -0.5 737,299 + GFF1390 0.24 -1.5 737,848 - -0.5 737,848 - -0.9 737,848 - -2.2 738,138 + GFF1391 0.14 -0.1 738,138 + GFF1391 0.14 +0.3 738,139 - GFF1391 0.14 +0.4 738,139 - GFF1391 0.14 -0.9 738,139 - GFF1391 0.14 -1.2 738,192 + GFF1391 0.18 -0.5 738,206 + GFF1391 0.19 +0.1 738,207 - GFF1391 0.19 +0.3 738,207 - GFF1391 0.19 -0.5 738,618 + GFF1391 0.45 -2.1 738,619 - GFF1391 0.45 -0.1 738,619 - GFF1391 0.45 -0.2
Or see this region's nucleotide sequence