Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1317 and GFF1318 are separated by 2 nucleotides GFF1318 and GFF1319 overlap by 4 nucleotides GFF1319 and GFF1320 are separated by 200 nucleotides
GFF1317 - no description, at 653,425 to 654,222
GFF1317
GFF1318 - hypothetical protein, at 654,225 to 654,722
GFF1318
GFF1319 - no description, at 654,719 to 655,192
GFF1319
GFF1320 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 655,393 to 657,480
GFF1320
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.825 kb on + strand, within GFF1317 at 653.825 kb on + strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.751 kb on + strand at 654.752 kb on - strand at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.124 kb on + strand, within GFF1319 at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.166 kb on - strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.172 kb on - strand at 655.172 kb on - strand at 655.172 kb on - strand at 655.188 kb on + strand at 655.188 kb on + strand at 655.218 kb on - strand at 655.218 kb on - strand at 655.218 kb on - strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.243 kb on - strand at 655.340 kb on + strand at 655.340 kb on + strand at 655.340 kb on + strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 653,720 + GFF1317 0.37 -0.5 653,720 + GFF1317 0.37 +0.2 653,720 + GFF1317 0.37 +0.5 653,720 + GFF1317 0.37 -0.4 653,720 + GFF1317 0.37 +0.1 653,720 + GFF1317 0.37 +0.9 653,720 + GFF1317 0.37 -0.9 653,720 + GFF1317 0.37 -1.4 653,720 + GFF1317 0.37 -0.3 653,720 + GFF1317 0.37 -0.9 653,720 + GFF1317 0.37 -0.4 653,721 - GFF1317 0.37 +0.5 653,721 - GFF1317 0.37 +0.9 653,721 - GFF1317 0.37 -0.9 653,721 - GFF1317 0.37 +0.3 653,721 - GFF1317 0.37 -0.9 653,721 - GFF1317 0.37 +0.9 653,721 - GFF1317 0.37 +0.1 653,721 - GFF1317 0.37 -0.0 653,721 - GFF1317 0.37 -0.4 653,721 - GFF1317 0.37 +0.1 653,721 - GFF1317 0.37 -1.9 653,721 - GFF1317 0.37 +0.5 653,721 - GFF1317 0.37 +0.6 653,721 - GFF1317 0.37 +0.7 653,721 - GFF1317 0.37 -0.3 653,721 - GFF1317 0.37 -0.8 653,721 - GFF1317 0.37 -0.4 653,825 + GFF1317 0.50 -0.6 653,825 + GFF1317 0.50 -0.5 653,826 - GFF1317 0.50 -0.0 653,826 - GFF1317 0.50 +0.0 653,826 - GFF1317 0.50 +1.1 653,826 - GFF1317 0.50 -0.6 653,826 - GFF1317 0.50 +0.0 654,184 + -0.4 654,184 + -0.5 654,184 + -0.3 654,184 + -0.9 654,184 + -0.9 654,184 + -0.9 654,185 - -0.7 654,185 - -0.9 654,185 - -0.5 654,185 - -2.1 654,185 - -0.7 654,185 - +0.6 654,649 + GFF1318 0.85 -0.6 654,649 + GFF1318 0.85 -0.4 654,649 + GFF1318 0.85 +0.0 654,649 + GFF1318 0.85 +0.2 654,649 + GFF1318 0.85 -0.2 654,650 - GFF1318 0.85 +0.4 654,650 - GFF1318 0.85 -0.4 654,650 - GFF1318 0.85 +0.1 654,650 - GFF1318 0.85 -0.5 654,650 - GFF1318 0.85 -0.2 654,751 + +0.7 654,752 - -0.9 654,834 + GFF1319 0.24 -2.7 654,834 + GFF1319 0.24 -1.0 654,834 + GFF1319 0.24 -0.8 654,834 + GFF1319 0.24 -0.0 654,834 + GFF1319 0.24 +0.2 654,834 + GFF1319 0.24 +0.5 654,834 + GFF1319 0.24 -0.5 654,834 + GFF1319 0.24 +0.2 654,834 + GFF1319 0.24 +0.7 654,834 + GFF1319 0.24 -0.2 654,834 + GFF1319 0.24 -0.4 654,834 + GFF1319 0.24 +0.2 654,834 + GFF1319 0.24 +0.6 654,834 + GFF1319 0.24 -0.0 654,834 + GFF1319 0.24 -1.1 654,835 - GFF1319 0.24 +0.3 654,835 - GFF1319 0.24 -0.2 654,835 - GFF1319 0.24 -0.9 654,835 - GFF1319 0.24 -0.2 654,835 - GFF1319 0.24 -0.8 654,835 - GFF1319 0.24 +0.7 654,835 - GFF1319 0.24 -0.5 654,835 - GFF1319 0.24 +0.9 654,835 - GFF1319 0.24 +0.5 654,835 - GFF1319 0.24 +0.4 654,835 - GFF1319 0.24 +2.0 654,835 - GFF1319 0.24 +0.2 654,835 - GFF1319 0.24 -0.2 654,835 - GFF1319 0.24 +1.2 654,835 - GFF1319 0.24 +0.1 655,012 + GFF1319 0.62 +1.0 655,012 + GFF1319 0.62 +0.5 655,012 + GFF1319 0.62 -0.6 655,012 + GFF1319 0.62 -0.1 655,012 + GFF1319 0.62 -0.5 655,012 + GFF1319 0.62 -0.1 655,012 + GFF1319 0.62 -0.0 655,013 - GFF1319 0.62 -0.1 655,013 - GFF1319 0.62 -0.5 655,013 - GFF1319 0.62 +0.7 655,013 - GFF1319 0.62 +0.5 655,013 - GFF1319 0.62 +0.3 655,013 - GFF1319 0.62 +1.5 655,013 - GFF1319 0.62 +0.1 655,013 - GFF1319 0.62 +0.1 655,124 + GFF1319 0.85 -0.5 655,161 + -0.6 655,161 + +1.1 655,161 + +0.9 655,161 + -0.3 655,161 + +0.2 655,161 + +0.6 655,162 - -0.1 655,162 - +0.1 655,162 - -0.2 655,162 - -0.0 655,162 - +0.5 655,162 - +0.5 655,162 - -0.1 655,164 + -0.6 655,164 + -0.6 655,164 + +0.0 655,164 + -0.6 655,164 + -0.5 655,164 + -1.2 655,164 + +0.5 655,165 - +0.8 655,165 - -0.1 655,165 - -0.1 655,165 - +0.2 655,166 - +0.7 655,171 + -1.1 655,171 + -0.2 655,171 + +1.9 655,171 + +0.5 655,172 - +0.0 655,172 - +1.5 655,172 - -0.0 655,188 + +0.3 655,188 + -0.7 655,218 - +0.3 655,218 - -0.1 655,218 - -1.4 655,242 + +0.3 655,242 + +1.0 655,242 + -1.4 655,243 - +0.9 655,340 + -0.2 655,340 + -0.1 655,340 + +0.7 655,341 - -0.5 655,341 - +0.0 655,341 - -0.4 655,341 - +0.3 655,341 - -1.8 655,341 - +0.2 655,394 + -0.3 655,394 + -0.5 655,394 + -1.4 655,394 + -0.2 655,394 + -0.4 655,394 + -0.8 655,394 + -0.0 655,394 + -0.4 655,394 + -0.4 655,394 + +0.9 655,395 - +1.0 655,395 - +0.1 655,395 - +0.3 655,395 - -0.6 655,395 - +0.2 655,395 - +0.2 655,395 - -1.4 655,532 + -0.9 655,532 + +0.0 655,532 + +0.3 655,532 + +0.3 655,532 + +0.7 655,532 + -1.5 655,533 - -0.5 655,533 - -0.5 655,533 - -0.7 655,533 - -0.5 655,533 - -0.4 656,132 + GFF1320 0.35 +0.5 656,132 + GFF1320 0.35 -0.5 656,132 + GFF1320 0.35 -0.1 656,132 + GFF1320 0.35 -1.3 656,132 + GFF1320 0.35 -0.5 656,132 + GFF1320 0.35 -0.4 656,132 + GFF1320 0.35 -0.1 656,132 + GFF1320 0.35 -0.7 656,132 + GFF1320 0.35 -0.1 656,133 - GFF1320 0.35 +1.9 656,133 - GFF1320 0.35 -0.4 656,133 - GFF1320 0.35 +1.2 656,133 - GFF1320 0.35 -0.0 656,133 - GFF1320 0.35 +0.5 656,133 - GFF1320 0.35 +0.5 656,133 - GFF1320 0.35 -0.1 656,133 - GFF1320 0.35 +0.3 656,133 - GFF1320 0.35 +0.1 656,133 - GFF1320 0.35 +0.1
Or see this region's nucleotide sequence