Strain Fitness in Variovorax sp. SCN45 around GFF1011

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1010 and GFF1011 are separated by 21 nucleotidesGFF1011 and GFF1012 are separated by 53 nucleotides GFF1010 - hypothetical protein, at 328,582 to 330,915 GFF1010 GFF1011 - Regulatory protein MerR, at 330,937 to 331,377 GFF1011 GFF1012 - Cystathionine beta-lyase (EC 4.4.1.8), at 331,431 to 332,651 GFF1012 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.392 kb on + strand, within GFF1010at 330.392 kb on + strand, within GFF1010at 330.393 kb on - strand, within GFF1010at 330.393 kb on - strand, within GFF1010at 330.531 kb on - strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.587 kb on + strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.588 kb on - strand, within GFF1010at 330.650 kb on + strand, within GFF1010at 330.650 kb on + strand, within GFF1010at 330.651 kb on - strand, within GFF1010at 330.758 kb on + strandat 330.758 kb on + strandat 330.758 kb on + strandat 330.758 kb on + strandat 330.758 kb on + strandat 330.758 kb on + strandat 330.758 kb on + strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.759 kb on - strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.908 kb on + strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.909 kb on - strandat 330.997 kb on + strand, within GFF1011at 330.997 kb on + strand, within GFF1011at 330.997 kb on + strand, within GFF1011at 330.998 kb on - strand, within GFF1011at 330.998 kb on - strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.286 kb on + strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.287 kb on - strand, within GFF1011at 331.289 kb on + strand, within GFF1011at 331.289 kb on + strand, within GFF1011at 331.289 kb on + strand, within GFF1011at 331.289 kb on + strand, within GFF1011at 331.289 kb on + strand, within GFF1011at 331.290 kb on - strand, within GFF1011at 331.290 kb on - strand, within GFF1011at 331.290 kb on - strand, within GFF1011at 331.290 kb on - strand, within GFF1011at 331.290 kb on - strand, within GFF1011at 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.343 kb on + strandat 331.344 kb on - strandat 331.344 kb on - strandat 331.344 kb on - strandat 331.383 kb on + strandat 331.384 kb on - strandat 331.404 kb on - strandat 331.404 kb on - strandat 331.404 kb on - strandat 331.408 kb on - strandat 331.414 kb on + strandat 331.414 kb on + strandat 331.445 kb on + strandat 331.446 kb on - strandat 331.446 kb on - strandat 331.494 kb on + strandat 331.494 kb on + strandat 331.494 kb on + strandat 331.495 kb on - strandat 331.495 kb on - strandat 331.495 kb on - strandat 331.495 kb on - strandat 331.608 kb on + strand, within GFF1012at 331.609 kb on - strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.614 kb on + strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.615 kb on - strand, within GFF1012at 331.779 kb on + strand, within GFF1012at 331.780 kb on - strand, within GFF1012at 331.842 kb on + strand, within GFF1012at 331.842 kb on + strand, within GFF1012at 331.843 kb on - strand, within GFF1012at 331.843 kb on - strand, within GFF1012at 331.843 kb on - strand, within GFF1012at 331.843 kb on - strand, within GFF1012at 331.932 kb on + strand, within GFF1012at 332.089 kb on - strand, within GFF1012at 332.089 kb on - strand, within GFF1012at 332.089 kb on - strand, within GFF1012at 332.089 kb on - strand, within GFF1012at 332.247 kb on + strand, within GFF1012at 332.247 kb on + strand, within GFF1012at 332.247 kb on + strand, within GFF1012at 332.247 kb on + strand, within GFF1012at 332.248 kb on - strand, within GFF1012at 332.248 kb on - strand, within GFF1012

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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330,392 + GFF1010 0.78 -0.0
330,392 + GFF1010 0.78 -0.2
330,393 - GFF1010 0.78 +0.1
330,393 - GFF1010 0.78 -0.1
330,531 - GFF1010 0.84 -0.6
330,587 + GFF1010 0.86 +1.5
330,587 + GFF1010 0.86 -0.8
330,587 + GFF1010 0.86 -1.7
330,587 + GFF1010 0.86 +0.5
330,587 + GFF1010 0.86 -0.4
330,587 + GFF1010 0.86 +0.6
330,587 + GFF1010 0.86 -0.0
330,587 + GFF1010 0.86 -1.0
330,587 + GFF1010 0.86 +0.1
330,588 - GFF1010 0.86 +0.6
330,588 - GFF1010 0.86 -0.2
330,588 - GFF1010 0.86 +0.5
330,588 - GFF1010 0.86 +0.5
330,588 - GFF1010 0.86 +0.5
330,588 - GFF1010 0.86 -0.0
330,588 - GFF1010 0.86 -0.6
330,588 - GFF1010 0.86 -0.2
330,650 + GFF1010 0.89 -0.5
330,650 + GFF1010 0.89 -0.9
330,651 - GFF1010 0.89 +0.1
330,758 + -0.6
330,758 + -1.5
330,758 + -0.4
330,758 + +0.7
330,758 + +0.2
330,758 + -1.3
330,758 + +0.7
330,759 - -1.0
330,759 - +0.1
330,759 - -0.5
330,759 - +1.3
330,759 - +1.1
330,759 - -0.8
330,759 - -0.2
330,759 - +0.2
330,908 + -0.0
330,908 + -1.0
330,908 + -1.2
330,908 + -1.2
330,908 + -0.6
330,908 + -0.2
330,908 + -0.1
330,908 + +0.1
330,908 + +1.1
330,908 + +0.5
330,908 + +0.1
330,908 + -0.0
330,909 - +0.7
330,909 - -0.2
330,909 - -0.1
330,909 - -0.3
330,909 - -1.0
330,909 - -0.4
330,909 - +0.2
330,909 - -1.0
330,909 - +0.1
330,909 - -0.0
330,909 - -0.3
330,997 + GFF1011 0.14 -0.9
330,997 + GFF1011 0.14 +0.3
330,997 + GFF1011 0.14 -1.2
330,998 - GFF1011 0.14 -0.6
330,998 - GFF1011 0.14 +0.4
331,286 + GFF1011 0.79 -0.2
331,286 + GFF1011 0.79 +0.3
331,286 + GFF1011 0.79 -1.9
331,286 + GFF1011 0.79 +0.4
331,286 + GFF1011 0.79 -0.2
331,286 + GFF1011 0.79 -0.2
331,286 + GFF1011 0.79 -0.0
331,286 + GFF1011 0.79 +0.7
331,286 + GFF1011 0.79 -0.0
331,287 - GFF1011 0.79 -0.3
331,287 - GFF1011 0.79 +2.9
331,287 - GFF1011 0.79 -0.4
331,287 - GFF1011 0.79 -0.1
331,287 - GFF1011 0.79 -0.2
331,287 - GFF1011 0.79 +0.3
331,287 - GFF1011 0.79 +0.5
331,287 - GFF1011 0.79 +0.9
331,287 - GFF1011 0.79 +0.5
331,287 - GFF1011 0.79 -0.0
331,287 - GFF1011 0.79 -0.3
331,287 - GFF1011 0.79 -1.3
331,287 - GFF1011 0.79 -0.5
331,287 - GFF1011 0.79 +0.4
331,287 - GFF1011 0.79 -0.3
331,287 - GFF1011 0.79 +0.5
331,287 - GFF1011 0.79 -0.3
331,287 - GFF1011 0.79 -0.0
331,289 + GFF1011 0.80 +0.1
331,289 + GFF1011 0.80 -1.3
331,289 + GFF1011 0.80 -0.0
331,289 + GFF1011 0.80 -0.0
331,289 + GFF1011 0.80 -1.5
331,290 - GFF1011 0.80 -0.8
331,290 - GFF1011 0.80 -1.1
331,290 - GFF1011 0.80 -0.1
331,290 - GFF1011 0.80 -0.1
331,290 - GFF1011 0.80 -0.0
331,343 + +0.3
331,343 + +0.1
331,343 + -0.0
331,343 + +0.1
331,343 + +2.5
331,343 + +1.1
331,343 + +0.3
331,343 + -1.4
331,343 + +0.2
331,343 + +1.8
331,344 - -0.8
331,344 - -0.5
331,344 - +1.5
331,383 + +0.1
331,384 - -0.2
331,404 - -1.2
331,404 - +0.0
331,404 - +0.1
331,408 - +0.4
331,414 + +0.3
331,414 + +1.3
331,445 + +1.4
331,446 - +0.5
331,446 - -0.2
331,494 + -0.0
331,494 + -1.4
331,494 + -1.5
331,495 - +1.3
331,495 - -0.3
331,495 - -0.4
331,495 - -1.3
331,608 + GFF1012 0.14 -0.3
331,609 - GFF1012 0.15 -0.1
331,614 + GFF1012 0.15 -0.5
331,614 + GFF1012 0.15 +0.0
331,614 + GFF1012 0.15 +0.5
331,614 + GFF1012 0.15 -0.1
331,614 + GFF1012 0.15 +0.1
331,614 + GFF1012 0.15 +0.2
331,614 + GFF1012 0.15 -0.6
331,614 + GFF1012 0.15 -0.2
331,614 + GFF1012 0.15 -0.5
331,614 + GFF1012 0.15 +1.1
331,614 + GFF1012 0.15 -0.5
331,615 - GFF1012 0.15 +0.6
331,615 - GFF1012 0.15 -0.8
331,615 - GFF1012 0.15 +0.2
331,615 - GFF1012 0.15 +1.5
331,615 - GFF1012 0.15 -1.6
331,615 - GFF1012 0.15 -0.3
331,615 - GFF1012 0.15 -0.2
331,615 - GFF1012 0.15 +0.5
331,615 - GFF1012 0.15 +1.5
331,779 + GFF1012 0.29 -1.8
331,780 - GFF1012 0.29 +0.3
331,842 + GFF1012 0.34 +0.2
331,842 + GFF1012 0.34 -0.1
331,843 - GFF1012 0.34 +0.2
331,843 - GFF1012 0.34 +0.1
331,843 - GFF1012 0.34 +0.3
331,843 - GFF1012 0.34 +0.1
331,932 + GFF1012 0.41 -0.5
332,089 - GFF1012 0.54 +0.8
332,089 - GFF1012 0.54 -0.6
332,089 - GFF1012 0.54 -0.2
332,089 - GFF1012 0.54 +0.0
332,247 + GFF1012 0.67 -1.5
332,247 + GFF1012 0.67 -0.2
332,247 + GFF1012 0.67 -0.3
332,247 + GFF1012 0.67 -0.5
332,248 - GFF1012 0.67 -0.4
332,248 - GFF1012 0.67 -0.5

Or see this region's nucleotide sequence