Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF996 and GFF997 are separated by 5 nucleotides GFF997 and GFF998 are separated by 7 nucleotides
GFF996 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 315,247 to 316,557
GFF996
GFF997 - UPF0070 protein YfgM, at 316,563 to 317,255
GFF997
GFF998 - Outer membrane beta-barrel assembly protein BamB, at 317,263 to 318,405
GFF998
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.532 kb on + strand at 316.533 kb on - strand at 316.533 kb on - strand at 316.533 kb on - strand at 316.830 kb on + strand, within GFF997 at 316.830 kb on + strand, within GFF997 at 316.830 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 316.941 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.076 kb on + strand, within GFF997 at 317.115 kb on + strand, within GFF997 at 317.154 kb on + strand, within GFF997
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 316,532 + +0.4 316,532 + +0.4 316,532 + -0.8 316,532 + -0.4 316,532 + -0.3 316,532 + -0.6 316,532 + -0.6 316,532 + -0.1 316,532 + +0.1 316,532 + -1.1 316,533 - +2.0 316,533 - +1.0 316,533 - +0.2 316,830 + GFF997 0.39 -0.2 316,830 + GFF997 0.39 -1.6 316,830 + GFF997 0.39 -1.3 316,941 + GFF997 0.55 -1.8 316,941 + GFF997 0.55 +1.0 316,941 + GFF997 0.55 -0.6 316,941 + GFF997 0.55 -1.2 316,941 + GFF997 0.55 -0.2 317,076 + GFF997 0.74 -1.3 317,076 + GFF997 0.74 +1.1 317,076 + GFF997 0.74 -1.8 317,076 + GFF997 0.74 -0.5 317,076 + GFF997 0.74 -0.6 317,076 + GFF997 0.74 +0.4 317,076 + GFF997 0.74 -0.1 317,076 + GFF997 0.74 -0.8 317,076 + GFF997 0.74 +0.4 317,076 + GFF997 0.74 +0.3 317,076 + GFF997 0.74 -1.3 317,076 + GFF997 0.74 +2.1 317,076 + GFF997 0.74 -0.9 317,115 + GFF997 0.80 +2.1 317,154 + GFF997 0.85 +1.4
Or see this region's nucleotide sequence