Strain Fitness in Variovorax sp. SCN45 around GFF925

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF923 and GFF924 are separated by 100 nucleotidesGFF924 and GFF925 are separated by 70 nucleotidesGFF925 and GFF926 are separated by 46 nucleotidesGFF926 and GFF927 overlap by 4 nucleotides GFF923 - Chromosome partition protein smc, at 235,927 to 236,310 GFF923 GFF924 - hypothetical protein, at 236,411 to 237,208 GFF924 GFF925 - hypothetical protein, at 237,279 to 238,058 GFF925 GFF926 - Transcriptional regulator, AcrR family, at 238,105 to 238,785 GFF926 GFF927 - Acyl-CoA dehydrogenase, at 238,782 to 240,494 GFF927 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 236.308 kb on + strandat 236.309 kb on - strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.377 kb on + strandat 236.495 kb on + strand, within GFF924at 236.495 kb on + strand, within GFF924at 236.496 kb on - strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.726 kb on + strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.742 kb on - strand, within GFF924at 237.225 kb on - strandat 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.111 kb on + strandat 238.112 kb on - strandat 238.112 kb on - strandat 238.261 kb on + strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.268 kb on - strand, within GFF926at 238.436 kb on - strand, within GFF926at 238.489 kb on + strand, within GFF926at 238.489 kb on + strand, within GFF926at 238.514 kb on + strand, within GFF926at 238.514 kb on + strand, within GFF926at 238.515 kb on - strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.670 kb on - strand, within GFF926at 238.830 kb on + strandat 238.830 kb on + strandat 238.830 kb on + strandat 238.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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236,308 + +1.0
236,309 - -0.8
236,350 + +0.8
236,350 + -1.0
236,350 + -0.2
236,350 + -0.8
236,350 + -0.3
236,350 + +1.1
236,350 + -0.3
236,351 - +0.8
236,351 - -0.2
236,351 - +0.4
236,351 - -0.9
236,351 - -0.2
236,351 - +1.9
236,377 + +0.3
236,495 + GFF924 0.11 -0.6
236,495 + GFF924 0.11 +0.3
236,496 - GFF924 0.11 +0.1
236,654 + GFF924 0.30 +0.7
236,654 + GFF924 0.30 -0.4
236,655 - GFF924 0.31 -0.2
236,655 - GFF924 0.31 -0.3
236,655 - GFF924 0.31 -1.0
236,655 - GFF924 0.31 -0.1
236,655 - GFF924 0.31 -0.7
236,655 - GFF924 0.31 +0.3
236,655 - GFF924 0.31 -0.2
236,726 + GFF924 0.39 -0.4
236,727 - GFF924 0.40 -0.5
236,727 - GFF924 0.40 -0.4
236,727 - GFF924 0.40 -0.4
236,727 - GFF924 0.40 -0.9
236,727 - GFF924 0.40 -0.2
236,741 + GFF924 0.41 -0.4
236,741 + GFF924 0.41 -0.2
236,742 - GFF924 0.41 -0.8
237,225 - +1.1
237,507 + GFF925 0.29 -0.8
237,507 + GFF925 0.29 +0.3
237,507 + GFF925 0.29 -0.5
237,507 + GFF925 0.29 +0.6
237,507 + GFF925 0.29 +0.1
237,507 + GFF925 0.29 -0.6
237,507 + GFF925 0.29 +0.5
237,507 + GFF925 0.29 -0.6
237,507 + GFF925 0.29 +0.3
237,507 + GFF925 0.29 -0.3
237,507 + GFF925 0.29 -0.6
237,507 + GFF925 0.29 -0.8
237,507 + GFF925 0.29 -0.0
237,508 - GFF925 0.29 +0.5
237,508 - GFF925 0.29 -1.2
237,508 - GFF925 0.29 -0.3
237,508 - GFF925 0.29 +0.4
237,508 - GFF925 0.29 -0.2
237,508 - GFF925 0.29 +1.0
237,508 - GFF925 0.29 -0.5
237,508 - GFF925 0.29 -0.7
237,508 - GFF925 0.29 -0.4
237,508 - GFF925 0.29 -0.2
237,508 - GFF925 0.29 -0.6
237,508 - GFF925 0.29 +1.4
237,867 + GFF925 0.75 -0.2
237,867 + GFF925 0.75 -1.4
237,867 + GFF925 0.75 +0.1
237,867 + GFF925 0.75 -1.3
237,867 + GFF925 0.75 -0.6
237,868 - GFF925 0.76 -0.3
237,868 - GFF925 0.76 -0.1
237,868 - GFF925 0.76 +0.4
237,868 - GFF925 0.76 +0.4
238,014 + +0.2
238,014 + -1.0
238,014 + +0.2
238,014 + +0.3
238,014 + -0.7
238,014 + +0.1
238,014 + +1.7
238,014 + -2.1
238,014 + +0.4
238,014 + -0.5
238,014 + -0.3
238,014 + -0.5
238,014 + +0.1
238,014 + -0.7
238,014 + -0.2
238,014 + -0.3
238,014 + +0.0
238,014 + +0.2
238,015 - +0.7
238,015 - +1.4
238,015 - -0.7
238,015 - +0.2
238,015 - -2.6
238,015 - -0.1
238,015 - -0.2
238,015 - -0.2
238,015 - -0.0
238,015 - -1.0
238,015 - -0.6
238,015 - -0.0
238,015 - +0.0
238,111 + +0.5
238,112 - +0.4
238,112 - -0.3
238,261 + GFF926 0.23 +0.1
238,262 - GFF926 0.23 -1.3
238,262 - GFF926 0.23 -0.6
238,262 - GFF926 0.23 +0.7
238,262 - GFF926 0.23 -0.9
238,267 + GFF926 0.24 -0.6
238,267 + GFF926 0.24 +0.2
238,267 + GFF926 0.24 +0.1
238,268 - GFF926 0.24 +0.0
238,436 - GFF926 0.49 -0.3
238,489 + GFF926 0.56 -0.4
238,489 + GFF926 0.56 -0.8
238,514 + GFF926 0.60 -0.4
238,514 + GFF926 0.60 +1.1
238,515 - GFF926 0.60 -0.8
238,669 + GFF926 0.83 -0.6
238,669 + GFF926 0.83 +0.5
238,669 + GFF926 0.83 +0.7
238,669 + GFF926 0.83 +1.0
238,670 - GFF926 0.83 -0.2
238,830 + -1.0
238,830 + -0.2
238,830 + -1.1
238,831 - -0.3

Or see this region's nucleotide sequence