Strain Fitness in Variovorax sp. SCN45 around GFF900

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF899 and GFF900 are separated by 113 nucleotidesGFF900 and GFF901 are separated by 13 nucleotidesGFF901 and GFF902 are separated by 49 nucleotides GFF899 - Dienelactone hydrolase family protein, at 210,314 to 211,546 GFF899 GFF900 - hypothetical protein, at 211,660 to 212,676 GFF900 GFF901 - no description, at 212,690 to 213,325 GFF901 GFF902 - Transcriptional regulator, AsnC family, at 213,375 to 213,869 GFF902 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 210.723 kb on - strand, within GFF899at 210.764 kb on + strand, within GFF899at 210.764 kb on + strand, within GFF899at 210.767 kb on + strand, within GFF899at 210.767 kb on + strand, within GFF899at 210.768 kb on - strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.923 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.077 kb on - strand, within GFF899at 211.133 kb on + strand, within GFF899at 211.133 kb on + strand, within GFF899at 211.134 kb on - strand, within GFF899at 211.134 kb on - strand, within GFF899at 211.172 kb on + strand, within GFF899at 211.173 kb on - strand, within GFF899at 211.173 kb on - strand, within GFF899at 211.193 kb on + strand, within GFF899at 211.193 kb on + strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.195 kb on + strand, within GFF899at 211.195 kb on + strand, within GFF899at 211.196 kb on - strand, within GFF899at 211.297 kb on + strand, within GFF899at 211.298 kb on - strand, within GFF899at 211.403 kb on + strand, within GFF899at 211.404 kb on - strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.531 kb on + strandat 211.531 kb on + strandat 211.532 kb on - strandat 211.583 kb on + strandat 211.583 kb on + strandat 211.584 kb on - strandat 211.584 kb on - strandat 211.623 kb on - strandat 211.780 kb on + strand, within GFF900at 211.804 kb on + strand, within GFF900at 211.805 kb on - strand, within GFF900at 211.805 kb on - strand, within GFF900at 211.820 kb on - strand, within GFF900at 211.909 kb on + strand, within GFF900at 211.910 kb on - strand, within GFF900at 211.910 kb on - strand, within GFF900at 211.916 kb on - strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.961 kb on - strand, within GFF900at 212.029 kb on + strand, within GFF900at 212.030 kb on - strand, within GFF900at 212.030 kb on - strand, within GFF900at 212.129 kb on - strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.201 kb on - strand, within GFF900at 212.201 kb on - strand, within GFF900at 212.384 kb on - strand, within GFF900at 213.069 kb on + strand, within GFF901at 213.070 kb on - strand, within GFF901at 213.070 kb on - strand, within GFF901at 213.454 kb on + strand, within GFF902at 213.455 kb on - strand, within GFF902at 213.455 kb on - strand, within GFF902at 213.481 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.514 kb on + strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.515 kb on - strand, within GFF902at 213.517 kb on + strand, within GFF902at 213.517 kb on + strand, within GFF902at 213.517 kb on + strand, within GFF902at 213.518 kb on - strand, within GFF902at 213.518 kb on - strand, within GFF902at 213.518 kb on - strand, within GFF902at 213.523 kb on + strand, within GFF902at 213.541 kb on + strand, within GFF902at 213.541 kb on + strand, within GFF902at 213.541 kb on + strand, within GFF902at 213.541 kb on + strand, within GFF902at 213.541 kb on + strand, within GFF902at 213.542 kb on - strand, within GFF902at 213.542 kb on - strand, within GFF902at 213.542 kb on - strand, within GFF902at 213.571 kb on - strand, within GFF902at 213.571 kb on - strand, within GFF902at 213.589 kb on + strand, within GFF902at 213.590 kb on - strand, within GFF902at 213.590 kb on - strand, within GFF902at 213.590 kb on - strand, within GFF902

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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210,723 - GFF899 0.33 -0.4
210,764 + GFF899 0.36 +0.4
210,764 + GFF899 0.36 +0.7
210,767 + GFF899 0.37 -0.6
210,767 + GFF899 0.37 -1.7
210,768 - GFF899 0.37 +0.1
210,917 + GFF899 0.49 -0.7
210,917 + GFF899 0.49 +0.1
210,917 + GFF899 0.49 -0.1
210,917 + GFF899 0.49 +0.3
210,917 + GFF899 0.49 -0.6
210,918 - GFF899 0.49 +0.4
210,918 - GFF899 0.49 +1.8
210,918 - GFF899 0.49 +0.1
210,918 - GFF899 0.49 -1.1
210,918 - GFF899 0.49 -0.2
210,918 - GFF899 0.49 -0.2
210,923 + GFF899 0.49 +1.0
211,040 + GFF899 0.59 -0.3
211,040 + GFF899 0.59 -0.6
211,040 + GFF899 0.59 +0.0
211,040 + GFF899 0.59 -1.6
211,077 - GFF899 0.62 +0.5
211,133 + GFF899 0.66 -1.0
211,133 + GFF899 0.66 -0.0
211,134 - GFF899 0.67 +0.4
211,134 - GFF899 0.67 -0.3
211,172 + GFF899 0.70 +0.1
211,173 - GFF899 0.70 -0.8
211,173 - GFF899 0.70 +1.4
211,193 + GFF899 0.71 +1.1
211,193 + GFF899 0.71 +0.4
211,194 - GFF899 0.71 -1.4
211,194 - GFF899 0.71 -0.7
211,194 - GFF899 0.71 -0.3
211,194 - GFF899 0.71 -1.0
211,195 + GFF899 0.71 -0.0
211,195 + GFF899 0.71 -0.1
211,196 - GFF899 0.72 -0.5
211,297 + GFF899 0.80 +1.1
211,298 - GFF899 0.80 -0.9
211,403 + GFF899 0.88 +0.5
211,404 - GFF899 0.88 -0.6
211,418 + GFF899 0.90 -2.2
211,418 + GFF899 0.90 -0.9
211,418 + GFF899 0.90 -0.6
211,419 - GFF899 0.90 -0.2
211,419 - GFF899 0.90 -0.5
211,419 - GFF899 0.90 +1.3
211,531 + +0.1
211,531 + -1.3
211,532 - +0.7
211,583 + +0.0
211,583 + +0.5
211,584 - +1.2
211,584 - -0.1
211,623 - +0.3
211,780 + GFF900 0.12 +0.3
211,804 + GFF900 0.14 +0.1
211,805 - GFF900 0.14 -2.5
211,805 - GFF900 0.14 -0.3
211,820 - GFF900 0.16 +0.2
211,909 + GFF900 0.24 -0.2
211,910 - GFF900 0.25 -0.3
211,910 - GFF900 0.25 -1.4
211,916 - GFF900 0.25 +0.3
211,960 + GFF900 0.29 +0.1
211,960 + GFF900 0.29 -0.6
211,960 + GFF900 0.29 +0.1
211,961 - GFF900 0.30 -0.6
212,029 + GFF900 0.36 -0.5
212,030 - GFF900 0.36 -0.3
212,030 - GFF900 0.36 +1.8
212,129 - GFF900 0.46 +1.4
212,140 + GFF900 0.47 -0.5
212,140 + GFF900 0.47 -0.1
212,140 + GFF900 0.47 -0.2
212,141 - GFF900 0.47 -1.1
212,141 - GFF900 0.47 -0.2
212,141 - GFF900 0.47 -1.9
212,201 - GFF900 0.53 -0.5
212,201 - GFF900 0.53 -1.2
212,384 - GFF900 0.71 -0.6
213,069 + GFF901 0.60 -0.6
213,070 - GFF901 0.60 -1.1
213,070 - GFF901 0.60 +1.8
213,454 + GFF902 0.16 -0.4
213,455 - GFF902 0.16 +0.6
213,455 - GFF902 0.16 -0.1
213,481 + GFF902 0.21 -0.1
213,514 + GFF902 0.28 -0.7
213,514 + GFF902 0.28 +3.0
213,514 + GFF902 0.28 -0.2
213,514 + GFF902 0.28 +0.1
213,514 + GFF902 0.28 +0.2
213,514 + GFF902 0.28 +0.7
213,514 + GFF902 0.28 +0.1
213,515 - GFF902 0.28 -0.2
213,515 - GFF902 0.28 +0.6
213,515 - GFF902 0.28 -0.9
213,515 - GFF902 0.28 -0.7
213,515 - GFF902 0.28 -0.5
213,515 - GFF902 0.28 -0.3
213,515 - GFF902 0.28 -0.5
213,515 - GFF902 0.28 +0.4
213,515 - GFF902 0.28 +0.0
213,515 - GFF902 0.28 +0.2
213,517 + GFF902 0.29 +1.4
213,517 + GFF902 0.29 +0.7
213,517 + GFF902 0.29 -0.3
213,518 - GFF902 0.29 -0.7
213,518 - GFF902 0.29 +1.1
213,518 - GFF902 0.29 -2.2
213,523 + GFF902 0.30 -0.1
213,541 + GFF902 0.34 -0.9
213,541 + GFF902 0.34 -0.5
213,541 + GFF902 0.34 -0.3
213,541 + GFF902 0.34 +0.4
213,541 + GFF902 0.34 -0.3
213,542 - GFF902 0.34 +0.4
213,542 - GFF902 0.34 +0.1
213,542 - GFF902 0.34 -0.3
213,571 - GFF902 0.40 +1.1
213,571 - GFF902 0.40 +0.8
213,589 + GFF902 0.43 +0.1
213,590 - GFF902 0.43 -1.7
213,590 - GFF902 0.43 -0.9
213,590 - GFF902 0.43 +0.9

Or see this region's nucleotide sequence