Strain Fitness in Variovorax sp. SCN45 around GFF822

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF821 and GFF822 are separated by 127 nucleotidesGFF822 and GFF823 are separated by 136 nucleotides GFF821 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 125,800 to 126,537 GFF821 GFF822 - Na+/H+-dicarboxylate symporter, at 126,665 to 128,008 GFF822 GFF823 - Inner membrane protein YbaL, KefB/KefC family, at 128,145 to 129,851 GFF823 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 125.730 kb on + strandat 125.750 kb on - strandat 125.750 kb on - strandat 125.779 kb on + strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.782 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.787 kb on + strandat 125.787 kb on + strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.917 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.350 kb on - strand, within GFF821at 126.487 kb on + strandat 126.627 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.638 kb on - strandat 126.638 kb on - strandat 126.665 kb on + strandat 126.707 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.720 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 127.049 kb on + strand, within GFF822at 127.049 kb on + strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.374 kb on + strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 128.007 kb on - strandat 128.111 kb on + strandat 128.124 kb on + strandat 128.250 kb on + strandat 128.250 kb on + strandat 128.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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125,730 + +1.1
125,750 - +0.3
125,750 - -1.6
125,779 + -1.0
125,780 - -0.8
125,780 - +0.1
125,780 - +0.7
125,782 + -0.7
125,783 + -1.1
125,783 + -0.6
125,783 + -0.1
125,783 + +0.8
125,783 + +1.4
125,783 + +0.2
125,783 + +0.6
125,784 - -0.7
125,784 - -0.0
125,784 - -1.0
125,784 - -1.2
125,784 - -0.6
125,784 - +0.2
125,784 - +0.2
125,787 + +0.1
125,787 + -0.8
125,788 - -0.2
125,788 - -0.1
125,788 - +1.1
125,818 + +0.2
125,818 + -1.0
125,818 + +0.8
125,818 + -0.5
125,818 + -1.2
125,818 + -0.6
125,818 + -1.6
125,818 + +0.1
125,818 + +1.4
125,818 + +0.0
125,819 - -2.6
125,819 - +0.4
125,819 - -0.8
125,819 - +2.4
125,819 - -0.9
125,917 + GFF821 0.16 +1.4
126,253 + GFF821 0.61 -0.5
126,253 + GFF821 0.61 -0.2
126,253 + GFF821 0.61 +0.4
126,254 - GFF821 0.62 -3.2
126,254 - GFF821 0.62 -0.2
126,350 - GFF821 0.75 -0.3
126,487 + -0.2
126,627 + +0.6
126,637 + -0.1
126,637 + -0.9
126,637 + -0.8
126,637 + +1.0
126,637 + -0.4
126,637 + +0.3
126,638 - -0.4
126,638 - -0.2
126,665 + +0.6
126,707 + -1.0
126,719 + -0.1
126,719 + -0.2
126,719 + +0.9
126,719 + -0.2
126,719 + -0.5
126,719 + -0.4
126,720 - +0.7
126,771 - +0.1
126,771 - +0.4
126,771 - -0.2
126,771 - +0.1
126,771 - +0.5
126,929 + GFF822 0.20 -0.8
126,929 + GFF822 0.20 +0.8
126,929 + GFF822 0.20 +1.4
126,929 + GFF822 0.20 -0.5
127,049 + GFF822 0.29 +1.1
127,049 + GFF822 0.29 -0.0
127,050 - GFF822 0.29 -0.2
127,050 - GFF822 0.29 -0.1
127,050 - GFF822 0.29 -0.2
127,050 - GFF822 0.29 -0.3
127,050 - GFF822 0.29 +0.3
127,262 + GFF822 0.44 +0.2
127,262 + GFF822 0.44 -0.2
127,262 + GFF822 0.44 +2.4
127,262 + GFF822 0.44 +2.4
127,262 + GFF822 0.44 -0.8
127,262 + GFF822 0.44 -0.2
127,262 + GFF822 0.44 -0.1
127,262 + GFF822 0.44 -0.6
127,262 + GFF822 0.44 -0.3
127,262 + GFF822 0.44 -1.6
127,262 + GFF822 0.44 -2.1
127,263 - GFF822 0.44 -1.8
127,263 - GFF822 0.44 -0.9
127,263 - GFF822 0.44 -0.3
127,263 - GFF822 0.44 -0.2
127,263 - GFF822 0.44 +0.1
127,263 - GFF822 0.44 -1.3
127,263 - GFF822 0.44 -0.0
127,263 - GFF822 0.44 -1.1
127,263 - GFF822 0.44 -1.3
127,263 - GFF822 0.44 -0.5
127,370 + GFF822 0.52 +0.2
127,370 + GFF822 0.52 +0.6
127,370 + GFF822 0.52 -0.9
127,370 + GFF822 0.52 -0.4
127,371 - GFF822 0.53 +0.1
127,371 - GFF822 0.53 -1.6
127,371 - GFF822 0.53 -0.2
127,371 - GFF822 0.53 -0.2
127,371 - GFF822 0.53 -0.7
127,371 - GFF822 0.53 +1.1
127,374 + GFF822 0.53 -1.1
127,455 - GFF822 0.59 -0.1
127,455 - GFF822 0.59 -0.1
127,455 - GFF822 0.59 -0.6
127,455 - GFF822 0.59 -0.2
127,455 - GFF822 0.59 -0.4
127,455 - GFF822 0.59 -0.2
127,584 - GFF822 0.68 +0.1
127,584 - GFF822 0.68 +0.2
127,584 - GFF822 0.68 -0.5
127,584 - GFF822 0.68 -0.3
127,584 - GFF822 0.68 +0.1
128,007 - -0.4
128,111 + +1.1
128,124 + -0.8
128,250 + -0.1
128,250 + -1.6
128,250 + +0.1

Or see this region's nucleotide sequence