Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF78 and GFF79 are separated by 72 nucleotides GFF79 and GFF80 are separated by 42 nucleotides GFF80 and GFF81 are separated by 137 nucleotides GFF81 and GFF82 are separated by 8 nucleotides
GFF78 - Cytochrome c family protein, at 95,027 to 96,190
GFF78
GFF79 - Dodecin, a flavin storage/sequestration protein, at 96,263 to 96,469
GFF79
GFF80 - no description, at 96,512 to 98,155
GFF80
GFF81 - Bll6900 protein, at 98,293 to 98,895
GFF81
GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557
GFF82
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.206 kb on + strand at 96.206 kb on + strand at 96.278 kb on + strand at 96.278 kb on + strand at 96.279 kb on - strand at 96.279 kb on - strand at 96.279 kb on - strand at 96.458 kb on - strand at 96.540 kb on + strand at 96.570 kb on + strand at 96.570 kb on + strand at 96.571 kb on - strand at 96.624 kb on - strand at 96.672 kb on + strand at 96.673 kb on - strand at 96.701 kb on + strand, within GFF80 at 96.702 kb on - strand, within GFF80 at 96.846 kb on + strand, within GFF80 at 96.847 kb on - strand, within GFF80 at 96.847 kb on - strand, within GFF80 at 96.847 kb on - strand, within GFF80 at 96.909 kb on + strand, within GFF80 at 96.910 kb on - strand, within GFF80 at 96.910 kb on - strand, within GFF80 at 97.039 kb on - strand, within GFF80 at 97.203 kb on + strand, within GFF80 at 97.203 kb on + strand, within GFF80 at 97.203 kb on + strand, within GFF80 at 97.203 kb on + strand, within GFF80 at 97.203 kb on + strand, within GFF80 at 97.204 kb on - strand, within GFF80 at 97.204 kb on - strand, within GFF80 at 97.206 kb on + strand, within GFF80 at 97.207 kb on - strand, within GFF80 at 97.593 kb on + strand, within GFF80 at 97.593 kb on + strand, within GFF80 at 97.594 kb on - strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.677 kb on + strand, within GFF80 at 97.678 kb on - strand, within GFF80 at 97.899 kb on + strand, within GFF80 at 98.109 kb on + strand at 98.110 kb on - strand at 98.110 kb on - strand at 98.146 kb on + strand at 98.146 kb on + strand at 98.147 kb on - strand at 98.147 kb on - strand at 98.189 kb on + strand at 98.190 kb on - strand at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.729 kb on + strand, within GFF81 at 98.730 kb on - strand, within GFF81 at 98.867 kb on + strand at 98.867 kb on + strand at 98.868 kb on - strand at 99.151 kb on + strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 96,206 + +1.1 96,206 + +1.4 96,278 + -0.9 96,278 + +0.3 96,279 - -1.8 96,279 - +1.3 96,279 - -0.4 96,458 - +0.4 96,540 + -0.0 96,570 + -0.3 96,570 + -0.2 96,571 - -1.4 96,624 - -0.8 96,672 + -1.8 96,673 - -0.3 96,701 + GFF80 0.11 +0.3 96,702 - GFF80 0.12 +0.2 96,846 + GFF80 0.20 +0.3 96,847 - GFF80 0.20 -0.7 96,847 - GFF80 0.20 -1.3 96,847 - GFF80 0.20 -1.5 96,909 + GFF80 0.24 +0.1 96,910 - GFF80 0.24 +0.3 96,910 - GFF80 0.24 -0.6 97,039 - GFF80 0.32 -0.6 97,203 + GFF80 0.42 -0.4 97,203 + GFF80 0.42 -0.3 97,203 + GFF80 0.42 -0.2 97,203 + GFF80 0.42 -0.0 97,203 + GFF80 0.42 -0.3 97,204 - GFF80 0.42 -0.7 97,204 - GFF80 0.42 -1.6 97,206 + GFF80 0.42 -0.0 97,207 - GFF80 0.42 -0.4 97,593 + GFF80 0.66 -1.5 97,593 + GFF80 0.66 +0.6 97,594 - GFF80 0.66 -0.7 97,670 + GFF80 0.70 +0.6 97,670 + GFF80 0.70 -0.3 97,670 + GFF80 0.70 -1.3 97,670 + GFF80 0.70 -0.2 97,671 - GFF80 0.70 -0.5 97,671 - GFF80 0.70 -0.4 97,671 - GFF80 0.70 -0.4 97,671 - GFF80 0.70 -0.4 97,677 + GFF80 0.71 +1.3 97,678 - GFF80 0.71 -0.9 97,899 + GFF80 0.84 -0.3 98,109 + -0.0 98,110 - -0.4 98,110 - -0.7 98,146 + -0.5 98,146 + +0.6 98,147 - -0.3 98,147 - -0.9 98,189 + +0.1 98,190 - -0.9 98,582 + GFF81 0.48 -0.7 98,582 + GFF81 0.48 -0.2 98,582 + GFF81 0.48 +0.2 98,660 + GFF81 0.61 +0.7 98,660 + GFF81 0.61 -0.0 98,660 + GFF81 0.61 +0.9 98,661 - GFF81 0.61 -0.3 98,661 - GFF81 0.61 -0.2 98,661 - GFF81 0.61 +1.9 98,729 + GFF81 0.72 +0.1 98,730 - GFF81 0.72 -0.2 98,867 + +0.3 98,867 + +1.3 98,868 - -1.2 99,151 + GFF82 0.38 +1.3 99,152 - GFF82 0.38 -0.8 99,152 - GFF82 0.38 -0.0 99,152 - GFF82 0.38 +0.0
Or see this region's nucleotide sequence