Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7355 and GFF7356 are separated by 182 nucleotides GFF7356 and GFF7357 overlap by 4 nucleotides GFF7357 and GFF7358 overlap by 17 nucleotides GFF7358 and GFF7359 overlap by 8 nucleotides
GFF7355 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 3,254 to 4,243
GFF7355
GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151
GFF7356
GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912
GFF7357
GFF7358 - Phenylacetate ABC transporter, permease protein 2, at 5,896 to 6,864
GFF7358
GFF7359 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 6,857 to 7,729
GFF7359
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.239 kb on + strand at 4.239 kb on + strand at 4.239 kb on + strand at 4.240 kb on - strand at 4.240 kb on - strand at 4.439 kb on + strand at 4.440 kb on - strand at 4.517 kb on + strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.779 kb on - strand, within GFF7356 at 5.074 kb on + strand, within GFF7356 at 5.102 kb on + strand at 5.167 kb on + strand at 5.167 kb on + strand at 5.168 kb on - strand at 5.449 kb on + strand, within GFF7357 at 5.450 kb on - strand, within GFF7357 at 5.753 kb on - strand, within GFF7357 at 6.014 kb on + strand, within GFF7358 at 6.014 kb on + strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.203 kb on + strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.518 kb on + strand, within GFF7358 at 6.519 kb on - strand, within GFF7358 at 6.644 kb on + strand, within GFF7358 at 6.695 kb on + strand, within GFF7358 at 6.712 kb on - strand, within GFF7358 at 6.734 kb on + strand, within GFF7358 at 6.735 kb on - strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.743 kb on - strand, within GFF7358
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 4,239 + -1.2 4,239 + -2.3 4,239 + -1.5 4,240 - -0.0 4,240 - +0.2 4,439 + -0.6 4,440 - +0.2 4,517 + GFF7356 0.13 -0.5 4,518 - GFF7356 0.13 -0.5 4,518 - GFF7356 0.13 +0.2 4,779 - GFF7356 0.49 +0.2 5,074 + GFF7356 0.89 -0.8 5,102 + +0.5 5,167 + -0.7 5,167 + +0.2 5,168 - -0.0 5,449 + GFF7357 0.39 -1.7 5,450 - GFF7357 0.39 -0.8 5,753 - GFF7357 0.79 -0.1 6,014 + GFF7358 0.12 -0.2 6,014 + GFF7358 0.12 -0.6 6,015 - GFF7358 0.12 +1.2 6,015 - GFF7358 0.12 +1.8 6,203 + GFF7358 0.32 +0.8 6,204 - GFF7358 0.32 -0.7 6,204 - GFF7358 0.32 -0.2 6,518 + GFF7358 0.64 -0.8 6,519 - GFF7358 0.64 -0.8 6,644 + GFF7358 0.77 -0.2 6,695 + GFF7358 0.82 +0.2 6,712 - GFF7358 0.84 -0.1 6,734 + GFF7358 0.86 +0.0 6,735 - GFF7358 0.87 +0.1 6,742 + GFF7358 0.87 -0.5 6,742 + GFF7358 0.87 +0.1 6,743 - GFF7358 0.87 -0.7
Or see this region's nucleotide sequence