Strain Fitness in Variovorax sp. SCN45 around GFF6909

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6907 and GFF6908 overlap by 9 nucleotidesGFF6908 and GFF6909 overlap by 4 nucleotidesGFF6909 and GFF6910 are separated by 52 nucleotides GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867 GFF6907 GFF6908 - putative membrane protein, at 42,859 to 43,572 GFF6908 GFF6909 - Amidohydrolase, at 43,569 to 44,996 GFF6909 GFF6910 - Xanthine permease, at 45,049 to 46,389 GFF6910 Position (kb) 43 44 45Strain fitness (log2 ratio) -1 0 1at 43.124 kb on + strand, within GFF6908at 43.124 kb on + strand, within GFF6908at 43.125 kb on - strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.861 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.734 kb on + strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 45.194 kb on + strand, within GFF6910at 45.195 kb on - strand, within GFF6910at 45.195 kb on - strand, within GFF6910at 45.434 kb on + strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.936 kb on - strand, within GFF6910at 45.936 kb on - strand, within GFF6910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
43,124 + GFF6908 0.37 -0.8
43,124 + GFF6908 0.37 -0.3
43,125 - GFF6908 0.37 -0.0
43,403 + GFF6908 0.76 -0.3
43,403 + GFF6908 0.76 -1.2
43,403 + GFF6908 0.76 +0.1
43,403 + GFF6908 0.76 +0.6
43,403 + GFF6908 0.76 -0.2
43,403 + GFF6908 0.76 +0.9
43,403 + GFF6908 0.76 -0.0
43,403 + GFF6908 0.76 -1.5
43,404 - GFF6908 0.76 +0.1
43,404 - GFF6908 0.76 -0.8
43,404 - GFF6908 0.76 +0.2
43,404 - GFF6908 0.76 -0.2
43,404 - GFF6908 0.76 +0.2
43,404 - GFF6908 0.76 +0.1
43,404 - GFF6908 0.76 +0.5
43,404 - GFF6908 0.76 +0.3
43,404 - GFF6908 0.76 +0.0
43,861 + GFF6909 0.20 -0.4
44,143 + GFF6909 0.40 -0.7
44,143 + GFF6909 0.40 -1.1
44,143 + GFF6909 0.40 -0.3
44,143 + GFF6909 0.40 -0.0
44,143 + GFF6909 0.40 -1.1
44,144 - GFF6909 0.40 +0.2
44,144 - GFF6909 0.40 -0.0
44,144 - GFF6909 0.40 +0.2
44,144 - GFF6909 0.40 -0.8
44,144 - GFF6909 0.40 -1.4
44,144 - GFF6909 0.40 -1.1
44,144 - GFF6909 0.40 -0.2
44,144 - GFF6909 0.40 -0.6
44,144 - GFF6909 0.40 +0.0
44,144 - GFF6909 0.40 +0.2
44,662 + GFF6909 0.77 -1.0
44,662 + GFF6909 0.77 -0.3
44,662 + GFF6909 0.77 -0.5
44,662 + GFF6909 0.77 -0.3
44,662 + GFF6909 0.77 +0.1
44,662 + GFF6909 0.77 -0.5
44,663 - GFF6909 0.77 +1.3
44,663 - GFF6909 0.77 -0.9
44,663 - GFF6909 0.77 -0.3
44,663 - GFF6909 0.77 +0.5
44,663 - GFF6909 0.77 -0.5
44,663 - GFF6909 0.77 -0.9
44,663 - GFF6909 0.77 -0.7
44,734 + GFF6909 0.82 +0.1
44,735 - GFF6909 0.82 +0.3
44,735 - GFF6909 0.82 -1.1
44,735 - GFF6909 0.82 -0.2
44,735 - GFF6909 0.82 +1.4
44,735 - GFF6909 0.82 -0.1
44,735 - GFF6909 0.82 +0.1
45,194 + GFF6910 0.11 +0.2
45,195 - GFF6910 0.11 +0.1
45,195 - GFF6910 0.11 +0.8
45,434 + GFF6910 0.29 -0.2
45,435 - GFF6910 0.29 +0.1
45,435 - GFF6910 0.29 -0.5
45,435 - GFF6910 0.29 -0.3
45,435 - GFF6910 0.29 -0.3
45,435 - GFF6910 0.29 -0.8
45,935 + GFF6910 0.66 +0.1
45,935 + GFF6910 0.66 +0.1
45,935 + GFF6910 0.66 -0.5
45,935 + GFF6910 0.66 +0.1
45,935 + GFF6910 0.66 -0.5
45,935 + GFF6910 0.66 -1.1
45,936 - GFF6910 0.66 -0.2
45,936 - GFF6910 0.66 -0.1

Or see this region's nucleotide sequence