Strain Fitness in Variovorax sp. SCN45 around GFF6508

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
1,643	+				-0.1
1,644	-				+0.0
1,644	-				-0.4
1,644	-				-0.4
1,906	+		GFF6506	0.85	-0.1
1,906	+		GFF6506	0.85	-0.8
1,906	+		GFF6506	0.85	-0.2
1,906	+		GFF6506	0.85	+0.1
1,907	-		GFF6506	0.85	+0.1
1,907	-		GFF6506	0.85	-0.0
1,972	+				-0.9
1,973	-				-0.1
1,990	+				-0.4
2,003	+				-0.4
2,003	+				-0.1
2,004	-				+0.1
2,004	-				+0.8
2,004	-				-1.1
2,105	+				-0.6
2,105	+				-0.5
2,106	-				-0.7
2,125	+				-0.5
2,126	-				-0.2
2,142	+				+1.8
2,142	+				-0.1
2,152	+				+0.9
2,152	+				-0.2
2,153	-				-0.6
2,181	+				-0.4
2,182	-				+1.2
2,182	-				-0.1
2,182	-				+0.2
2,182	-				+1.0
2,261	-				+1.2
2,271	+		GFF6507	0.15	+0.4
2,303	+		GFF6507	0.38	+1.4
2,303	+		GFF6507	0.38	-0.6
2,303	+		GFF6507	0.38	+0.0
2,303	+		GFF6507	0.38	+1.8
2,304	-		GFF6507	0.38	-0.6
2,304	-		GFF6507	0.38	+1.7
2,305	+		GFF6507	0.39	+0.6
2,305	+		GFF6507	0.39	+0.3
2,369	+		GFF6507	0.83	-0.6
2,370	-		GFF6507	0.84	+0.5
2,370	-		GFF6507	0.84	-0.7
2,429	+				-0.1
2,429	+				-0.4
2,429	+				-1.0
2,429	+				+1.1
2,430	-				-0.8
2,430	-				+0.2
2,430	-				-0.1
2,430	-				+0.1
2,439	+				+1.4
2,439	+				-0.4
2,440	-				-0.0
2,440	-				-0.7
2,453	+				-0.7
2,454	-				+0.6
2,512	+				-0.1
2,512	+				-0.6
2,512	+				+0.4
2,536	+				-0.3
2,536	+				+0.9
2,536	+				+0.1
2,536	+				+0.4
2,536	+				-0.4
2,536	+				+0.2
2,537	-				+0.0
2,537	-				+0.4
2,618	+				-0.4
2,618	+				-0.2
2,618	+				+0.8
2,619	-				-0.1
2,619	-				+0.3
2,619	-				-0.8
2,619	-				-0.4
2,661	-				+0.9
2,706	+				+0.4
2,773	+		GFF6508	0.12	-0.3
2,774	-		GFF6508	0.12	-0.2
2,774	-		GFF6508	0.12	-0.4
2,774	-		GFF6508	0.12	+0.2
2,774	-		GFF6508	0.12	+1.4
2,774	-		GFF6508	0.12	+0.4
2,862	+		GFF6508	0.19	-0.8
2,862	+		GFF6508	0.19	+0.7
2,862	+		GFF6508	0.19	-0.0
2,862	+		GFF6508	0.19	+0.9
2,863	-		GFF6508	0.19	-0.6
2,863	-		GFF6508	0.19	-0.1
3,000	+		GFF6508	0.31	+0.7
3,001	-		GFF6508	0.31	+0.8
3,125	-		GFF6508	0.41	+1.2
3,130	+		GFF6508	0.41	+0.9
3,130	+		GFF6508	0.41	-0.3
3,130	+		GFF6508	0.41	-0.6
3,130	+		GFF6508	0.41	-1.1
3,130	+		GFF6508	0.41	+0.8
3,130	+		GFF6508	0.41	+0.1
3,130	+		GFF6508	0.41	+0.0
3,130	+		GFF6508	0.41	-1.4
3,130	+		GFF6508	0.41	-0.0
3,130	+		GFF6508	0.41	-0.4
3,130	+		GFF6508	0.41	-1.3
3,130	+		GFF6508	0.41	-0.4
3,131	-		GFF6508	0.41	-0.6
3,131	-		GFF6508	0.41	-0.3
3,131	-		GFF6508	0.41	-0.8
3,131	-		GFF6508	0.41	-2.0
3,131	-		GFF6508	0.41	-0.6
3,131	-		GFF6508	0.41	-0.1
3,131	-		GFF6508	0.41	+0.4
3,131	-		GFF6508	0.41	+0.2
3,132	+		GFF6508	0.41	+0.4
3,132	+		GFF6508	0.41	-0.4
3,132	+		GFF6508	0.41	-0.1
3,132	+		GFF6508	0.41	-0.1
3,132	+		GFF6508	0.41	-0.8
3,133	-		GFF6508	0.41	+1.0
3,133	-		GFF6508	0.41	+0.2
3,174	+		GFF6508	0.45	+0.2
3,174	+		GFF6508	0.45	-0.1
3,174	+		GFF6508	0.45	+0.2
3,174	+		GFF6508	0.45	-0.9
3,174	+		GFF6508	0.45	+0.0
3,174	+		GFF6508	0.45	-0.4
3,174	+		GFF6508	0.45	-0.1
3,174	+		GFF6508	0.45	-0.1
3,174	+		GFF6508	0.45	+0.4
3,175	-		GFF6508	0.45	+0.4
3,175	-		GFF6508	0.45	-0.4
3,175	-		GFF6508	0.45	+0.3
3,175	-		GFF6508	0.45	+0.7
3,175	-		GFF6508	0.45	-0.1
3,175	-		GFF6508	0.45	-0.1
3,175	-		GFF6508	0.45	-0.2
3,237	+		GFF6508	0.50	-0.0
3,357	+		GFF6508	0.60	-0.4
3,357	+		GFF6508	0.60	-0.5
3,357	+		GFF6508	0.60	-0.8
3,357	+		GFF6508	0.60	-0.5
3,358	-		GFF6508	0.60	+0.7
3,358	-		GFF6508	0.60	-0.1
3,358	-		GFF6508	0.60	-0.5
3,367	-		GFF6508	0.61	-0.3
3,426	+		GFF6508	0.65	+0.5
3,426	+		GFF6508	0.65	+0.4
3,427	-		GFF6508	0.65	-0.7
3,514	-		GFF6508	0.73	-0.6
3,531	+		GFF6508	0.74	-0.3
3,531	+		GFF6508	0.74	-1.9
3,531	+		GFF6508	0.74	-0.3
3,531	+		GFF6508	0.74	+0.4
3,531	+		GFF6508	0.74	-0.2
3,531	+		GFF6508	0.74	-0.2
3,531	+		GFF6508	0.74	-1.7
3,531	+		GFF6508	0.74	-1.0
3,532	-		GFF6508	0.74	-1.7
3,532	-		GFF6508	0.74	-0.4
3,532	-		GFF6508	0.74	-0.4
3,532	-		GFF6508	0.74	-0.7
3,532	-		GFF6508	0.74	-1.4
3,532	-		GFF6508	0.74	+0.7
3,532	-		GFF6508	0.74	-0.7
3,532	-		GFF6508	0.74	+0.4
3,532	-		GFF6508	0.74	-0.3
3,735	+				-0.3
3,735	+				+0.4
3,736	-				-0.4
3,771	+				-0.6
3,771	+				-0.1
3,771	+				-0.6
3,771	+				+0.4
3,771	+				+0.2
3,772	-				-1.4
3,772	-				+0.3
3,809	+				+0.1
3,809	+				+1.2
3,809	+				+1.1
3,809	+				+0.6
3,810	-				-0.7
3,810	-				+0.1
3,810	-				-1.1
3,862	-				-1.4
3,862	-				-0.9
3,985	+				+0.4
3,985	+				+0.1
3,985	+				+0.2
4,022	+				+0.0
4,026	+				+0.3
4,026	+				-0.6
4,026	+				+0.0
4,027	-				+0.7
4,039	-				-0.7
4,100	+				-1.9
4,346	-		GFF6509	0.42	-0.2
4,403	-		GFF6509	0.52	+0.3
4,438	+		GFF6509	0.58	-0.3
4,438	+		GFF6509	0.58	-0.5
4,439	-		GFF6509	0.59	+0.3
4,543	+		GFF6509	0.77	+1.0
4,543	+		GFF6509	0.77	+0.1
4,543	+		GFF6509	0.77	-1.3
4,544	-		GFF6509	0.77	+0.0
4,544	-		GFF6509	0.77	-0.4
4,544	-		GFF6509	0.77	-0.5
4,609	+		GFF6509	0.89	-0.6
4,609	+		GFF6509	0.89	+0.2
4,609	+		GFF6509	0.89	+0.1
4,610	-		GFF6509	0.89	+0.3
4,610	-		GFF6509	0.89	+0.0
4,610	-		GFF6509	0.89	-0.8
4,610	-		GFF6509	0.89	+0.5
4,721	+				+0.3
4,721	+				+1.4
4,721	+				+0.1
4,722	-				+0.0
4,722	-				-0.3
4,764	+				-0.3
4,765	-				-0.7
4,765	-				-1.0
4,765	-				-0.8
4,765	-				-0.8
4,765	-				+0.0
4,765	-				+0.3
4,785	+				+0.4
4,785	+				+0.0
4,786	-				+1.4
4,786	-				-0.1
4,786	-				-0.1
4,786	-				+0.1
4,786	-				-0.3
4,786	-				-0.1
4,786	-				-0.8