Strain Fitness in Variovorax sp. SCN45 around GFF6489

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6487 and GFF6488 are separated by 76 nucleotidesGFF6488 and GFF6489 are separated by 497 nucleotidesGFF6489 and GFF6490 overlap by 4 nucleotidesGFF6490 and GFF6491 are separated by 80 nucleotides GFF6487 - Gfa-like protein, at 66,306 to 66,719 GFF6487 GFF6488 - no description, at 66,796 to 66,915 GFF6488 GFF6489 - no description, at 67,413 to 67,856 GFF6489 GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545 GFF6490 GFF6491 - SAM-dependent methyltransferase, at 68,626 to 69,315 GFF6491 Position (kb) 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 66.435 kb on + strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.813 kb on - strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.870 kb on - strand, within GFF6488at 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.973 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.128 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.204 kb on - strandat 67.204 kb on - strandat 67.447 kb on + strandat 67.448 kb on - strandat 67.448 kb on - strandat 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.472 kb on - strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.741 kb on + strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.764 kb on - strand, within GFF6489at 67.959 kb on + strand, within GFF6490at 67.959 kb on + strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.983 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.092 kb on - strand, within GFF6490at 68.092 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.227 kb on - strand, within GFF6490at 68.227 kb on - strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.474 kb on + strand, within GFF6490at 68.666 kb on + strandat 68.667 kb on - strandat 68.813 kb on + strand, within GFF6491

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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66,435 + GFF6487 0.31 -0.7
66,436 - GFF6487 0.31 +0.9
66,436 - GFF6487 0.31 +0.7
66,555 + GFF6487 0.60 -0.3
66,555 + GFF6487 0.60 -0.1
66,555 + GFF6487 0.60 -0.5
66,555 + GFF6487 0.60 -0.5
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 +1.0
66,556 - GFF6487 0.60 +0.9
66,556 - GFF6487 0.60 -1.0
66,556 - GFF6487 0.60 +0.5
66,556 - GFF6487 0.60 +0.5
66,556 - GFF6487 0.60 +0.3
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 -0.4
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 +1.5
66,624 + GFF6487 0.77 +0.5
66,624 + GFF6487 0.77 -0.1
66,645 + GFF6487 0.82 -0.1
66,645 + GFF6487 0.82 +0.2
66,645 + GFF6487 0.82 +0.3
66,645 + GFF6487 0.82 +0.6
66,645 + GFF6487 0.82 +0.5
66,646 - GFF6487 0.82 +1.2
66,646 - GFF6487 0.82 +0.0
66,646 - GFF6487 0.82 -0.5
66,646 - GFF6487 0.82 +0.0
66,646 - GFF6487 0.82 -1.4
66,646 - GFF6487 0.82 -0.1
66,812 + GFF6488 0.13 +0.5
66,812 + GFF6488 0.13 +0.1
66,812 + GFF6488 0.13 -0.4
66,813 - GFF6488 0.14 -0.0
66,856 + GFF6488 0.50 -0.5
66,856 + GFF6488 0.50 +1.0
66,856 + GFF6488 0.50 -0.1
66,857 - GFF6488 0.51 -0.3
66,857 - GFF6488 0.51 -0.5
66,870 - GFF6488 0.62 +0.1
66,915 + -0.6
66,915 + -0.2
66,915 + -0.4
66,915 + -0.4
66,916 - -1.3
66,916 - -0.5
66,916 - +0.2
66,916 - +0.2
66,973 + +0.9
67,113 + +0.5
67,113 + +0.2
67,113 + -1.9
67,113 + -1.0
67,113 + -0.2
67,113 + -0.7
67,113 + +0.3
67,113 - +0.1
67,114 - +0.0
67,114 - +0.3
67,114 - +0.6
67,114 - +0.3
67,114 - +0.3
67,128 + +0.1
67,155 + +0.1
67,155 + -0.9
67,155 + -0.4
67,155 + +0.3
67,155 + -0.0
67,156 - -0.0
67,156 - -0.1
67,156 - -1.1
67,156 - +0.4
67,156 - -0.9
67,156 - -1.9
67,203 + +0.1
67,203 + -0.2
67,203 + +0.3
67,204 - -0.0
67,204 - -1.1
67,447 + +0.5
67,448 - -0.6
67,448 - +1.0
67,471 + GFF6489 0.13 -0.4
67,471 + GFF6489 0.13 -0.5
67,471 + GFF6489 0.13 -0.3
67,471 + GFF6489 0.13 -0.2
67,471 + GFF6489 0.13 +0.5
67,472 - GFF6489 0.13 -0.7
67,531 + GFF6489 0.27 -0.2
67,531 + GFF6489 0.27 +0.7
67,531 + GFF6489 0.27 -0.5
67,531 + GFF6489 0.27 -0.4
67,531 + GFF6489 0.27 -0.3
67,531 + GFF6489 0.27 -0.8
67,531 + GFF6489 0.27 -1.9
67,531 + GFF6489 0.27 -0.1
67,532 - GFF6489 0.27 +0.2
67,532 - GFF6489 0.27 -0.9
67,532 - GFF6489 0.27 -1.0
67,532 - GFF6489 0.27 +0.0
67,532 - GFF6489 0.27 -0.4
67,532 - GFF6489 0.27 -0.8
67,532 - GFF6489 0.27 +0.5
67,532 - GFF6489 0.27 -0.0
67,532 - GFF6489 0.27 -0.7
67,532 - GFF6489 0.27 +0.6
67,741 + GFF6489 0.74 -0.2
67,742 - GFF6489 0.74 -0.1
67,742 - GFF6489 0.74 +0.6
67,764 - GFF6489 0.79 -0.3
67,959 + GFF6490 0.15 -2.4
67,959 + GFF6490 0.15 +0.1
67,960 - GFF6490 0.15 +0.9
67,960 - GFF6490 0.15 +0.8
67,960 - GFF6490 0.15 -0.6
67,983 + GFF6490 0.19 -0.7
68,091 + GFF6490 0.34 -1.2
68,091 + GFF6490 0.34 -0.7
68,091 + GFF6490 0.34 +2.8
68,091 + GFF6490 0.34 +0.7
68,091 + GFF6490 0.34 -0.3
68,091 + GFF6490 0.34 +0.6
68,091 + GFF6490 0.34 -0.1
68,092 - GFF6490 0.34 +0.5
68,092 - GFF6490 0.34 -0.9
68,143 - GFF6490 0.42 +0.1
68,143 - GFF6490 0.42 -0.6
68,143 - GFF6490 0.42 -0.3
68,143 - GFF6490 0.42 -0.8
68,226 + GFF6490 0.54 -1.1
68,226 + GFF6490 0.54 +0.1
68,226 + GFF6490 0.54 +0.1
68,226 + GFF6490 0.54 +0.6
68,227 - GFF6490 0.54 +1.0
68,227 - GFF6490 0.54 -1.5
68,289 + GFF6490 0.63 +0.9
68,289 + GFF6490 0.63 -0.6
68,289 + GFF6490 0.63 +0.5
68,289 + GFF6490 0.63 -0.7
68,290 - GFF6490 0.63 -0.0
68,290 - GFF6490 0.63 -0.2
68,290 - GFF6490 0.63 -0.7
68,290 - GFF6490 0.63 +0.1
68,290 - GFF6490 0.63 -0.5
68,474 + GFF6490 0.90 +1.3
68,666 + -1.5
68,667 - +0.2
68,813 + GFF6491 0.27 +2.5

Or see this region's nucleotide sequence