Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6467 and GFF6468 are separated by 44 nucleotides GFF6468 and GFF6469 overlap by 4 nucleotides GFF6469 and GFF6470 overlap by 4 nucleotides
GFF6467 - Nucleoside-diphosphate-sugar epimerases, at 44,198 to 45,217
GFF6467
GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230
GFF6468
GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721
GFF6469
GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995
GFF6470
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 44.637 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 45.170 kb on + strand at 45.170 kb on + strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.427 kb on + strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.790 kb on + strand, within GFF6468 at 45.791 kb on - strand, within GFF6468 at 45.791 kb on - strand, within GFF6468 at 46.222 kb on + strand at 46.223 kb on - strand at 46.223 kb on - strand at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.465 kb on - strand, within GFF6469 at 46.563 kb on + strand, within GFF6469 at 46.626 kb on + strand, within GFF6469 at 46.626 kb on + strand, within GFF6469 at 46.680 kb on + strand at 46.681 kb on - strand at 46.681 kb on - strand at 46.847 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.900 kb on - strand, within GFF6470 at 46.900 kb on - strand, within GFF6470 at 47.115 kb on - strand, within GFF6470 at 47.134 kb on + strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.183 kb on + strand, within GFF6470 at 47.187 kb on - strand, within GFF6470
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 44,637 - GFF6467 0.43 -0.1 44,670 - GFF6467 0.46 +1.3 44,670 - GFF6467 0.46 -1.9 44,670 - GFF6467 0.46 -0.4 45,170 + -0.2 45,170 + -0.7 45,171 - +0.3 45,171 - -0.0 45,171 - +0.3 45,215 + -0.1 45,215 + -0.6 45,215 + +0.0 45,215 + +0.1 45,215 + -0.3 45,215 + -0.5 45,215 + -0.4 45,216 - -0.3 45,216 - +0.6 45,216 - -1.0 45,216 - -2.4 45,216 - +0.5 45,427 + GFF6468 0.17 +0.1 45,428 - GFF6468 0.17 +0.1 45,428 - GFF6468 0.17 -0.1 45,428 - GFF6468 0.17 -0.1 45,428 - GFF6468 0.17 +0.1 45,445 + GFF6468 0.19 +0.5 45,445 + GFF6468 0.19 +1.3 45,445 + GFF6468 0.19 +1.5 45,445 + GFF6468 0.19 -0.4 45,445 + GFF6468 0.19 +1.3 45,445 + GFF6468 0.19 +0.9 45,790 + GFF6468 0.54 +0.1 45,791 - GFF6468 0.55 +0.3 45,791 - GFF6468 0.55 +1.7 46,222 + +0.1 46,223 - +0.3 46,223 - -0.1 46,405 + GFF6469 0.36 +0.0 46,405 + GFF6469 0.36 -0.4 46,405 + GFF6469 0.36 -0.5 46,405 + GFF6469 0.36 +0.3 46,405 + GFF6469 0.36 -0.5 46,405 + GFF6469 0.36 -1.7 46,405 + GFF6469 0.36 +0.7 46,405 + GFF6469 0.36 -0.1 46,406 - GFF6469 0.36 -0.3 46,406 - GFF6469 0.36 -0.0 46,406 - GFF6469 0.36 +0.1 46,406 - GFF6469 0.36 -0.6 46,465 - GFF6469 0.48 -0.1 46,563 + GFF6469 0.68 -0.5 46,626 + GFF6469 0.81 +0.2 46,626 + GFF6469 0.81 -0.3 46,680 + +0.0 46,681 - +1.2 46,681 - -0.8 46,847 + GFF6470 0.10 -0.2 46,899 + GFF6470 0.14 +0.1 46,899 + GFF6470 0.14 -0.4 46,899 + GFF6470 0.14 +1.1 46,900 - GFF6470 0.14 -0.2 46,900 - GFF6470 0.14 -0.1 47,115 - GFF6470 0.31 +0.5 47,134 + GFF6470 0.33 +0.0 47,135 - GFF6470 0.33 -0.1 47,135 - GFF6470 0.33 -0.0 47,135 - GFF6470 0.33 -0.8 47,183 + GFF6470 0.36 -0.8 47,187 - GFF6470 0.37 -0.4
Or see this region's nucleotide sequence