Strain Fitness in Variovorax sp. SCN45 around GFF6326

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
117,901	+		GFF6325	0.39	+1.5
117,901	+		GFF6325	0.39	+1.7
117,901	+		GFF6325	0.39	+0.5
117,901	+		GFF6325	0.39	+0.3
117,902	-		GFF6325	0.39	+1.0
117,902	-		GFF6325	0.39	-1.3
117,902	-		GFF6325	0.39	-1.5
117,902	-		GFF6325	0.39	+0.5
117,902	-		GFF6325	0.39	+0.4
117,902	-		GFF6325	0.39	-2.2
117,902	-		GFF6325	0.39	-0.1
117,910	+		GFF6325	0.40	+0.2
117,910	+		GFF6325	0.40	+0.4
117,910	+		GFF6325	0.40	-1.9
117,910	+		GFF6325	0.40	+0.3
117,910	+		GFF6325	0.40	-0.6
117,910	+		GFF6325	0.40	-0.8
117,911	-		GFF6325	0.40	-0.8
117,911	-		GFF6325	0.40	+0.1
117,911	-		GFF6325	0.40	-0.0
117,911	-		GFF6325	0.40	+0.1
117,911	-		GFF6325	0.40	+0.1
117,911	-		GFF6325	0.40	-1.7
117,911	-		GFF6325	0.40	+0.7
117,911	-		GFF6325	0.40	+0.4
118,006	+		GFF6325	0.47	+1.4
118,006	+		GFF6325	0.47	-0.3
118,006	+		GFF6325	0.47	-0.2
118,006	+		GFF6325	0.47	+0.3
118,006	+		GFF6325	0.47	+0.5
118,006	+		GFF6325	0.47	+0.6
118,006	+		GFF6325	0.47	-0.3
118,006	+		GFF6325	0.47	-1.0
118,006	+		GFF6325	0.47	-0.5
118,006	+		GFF6325	0.47	-0.3
118,006	+		GFF6325	0.47	+0.4
118,006	+		GFF6325	0.47	+0.9
118,006	+		GFF6325	0.47	+0.8
118,006	+		GFF6325	0.47	-0.4
118,006	+		GFF6325	0.47	+0.2
118,006	+		GFF6325	0.47	-0.3
118,006	+		GFF6325	0.47	-1.0
118,006	+		GFF6325	0.47	-0.2
118,007	-		GFF6325	0.47	-0.3
118,007	-		GFF6325	0.47	+0.3
118,007	-		GFF6325	0.47	-1.1
118,007	-		GFF6325	0.47	-0.7
118,007	-		GFF6325	0.47	+0.3
118,007	-		GFF6325	0.47	+0.1
118,007	-		GFF6325	0.47	+0.7
118,007	-		GFF6325	0.47	-0.5
118,007	-		GFF6325	0.47	-0.4
118,072	+		GFF6325	0.52	+0.1
118,072	+		GFF6325	0.52	+0.4
118,072	+		GFF6325	0.52	-0.9
118,072	+		GFF6325	0.52	-0.6
118,072	+		GFF6325	0.52	-0.5
118,072	+		GFF6325	0.52	+0.8
118,072	+		GFF6325	0.52	+0.4
118,072	+		GFF6325	0.52	+0.7
118,072	+		GFF6325	0.52	-0.7
118,072	+		GFF6325	0.52	-0.4
118,072	+		GFF6325	0.52	+0.1
118,072	+		GFF6325	0.52	+0.0
118,072	+		GFF6325	0.52	-0.2
118,073	-		GFF6325	0.52	-1.5
118,073	-		GFF6325	0.52	-1.9
118,073	-		GFF6325	0.52	-0.2
118,073	-		GFF6325	0.52	+1.7
118,073	-		GFF6325	0.52	+0.4
118,073	-		GFF6325	0.52	-0.2
118,073	-		GFF6325	0.52	-1.3
118,073	-		GFF6325	0.52	-0.4
118,073	-		GFF6325	0.52	-0.3
118,073	-		GFF6325	0.52	-0.6
118,073	-		GFF6325	0.52	+0.3
118,073	-		GFF6325	0.52	-1.1
118,073	-		GFF6325	0.52	+0.5
118,073	-		GFF6325	0.52	+1.1
118,073	-		GFF6325	0.52	-1.6
118,073	-		GFF6325	0.52	+0.3
118,073	-		GFF6325	0.52	+3.0
118,073	-		GFF6325	0.52	-0.0
118,073	-		GFF6325	0.52	-0.2
118,073	-		GFF6325	0.52	+0.1
118,135	+		GFF6325	0.57	-0.3
118,135	+		GFF6325	0.57	+0.3
118,135	+		GFF6325	0.57	-1.0
118,135	+		GFF6325	0.57	+2.1
118,135	+		GFF6325	0.57	-0.5
118,136	-		GFF6325	0.57	+0.2
118,136	-		GFF6325	0.57	+0.3
118,136	-		GFF6325	0.57	+1.2
118,136	-		GFF6325	0.57	-0.1
118,136	-		GFF6325	0.57	+0.3
118,136	-		GFF6325	0.57	-0.6
118,136	-		GFF6325	0.57	-0.6
118,136	-		GFF6325	0.57	+0.0
118,349	+		GFF6325	0.73	+0.2
118,387	+		GFF6325	0.75	+0.7
118,387	+		GFF6325	0.75	-0.0
118,387	+		GFF6325	0.75	-0.4
118,387	+		GFF6325	0.75	-0.1
118,388	-		GFF6325	0.76	+0.3
118,388	-		GFF6325	0.76	+0.9
118,388	-		GFF6325	0.76	-1.1
118,495	+		GFF6325	0.84	+0.3
118,585	+				-0.1
118,585	+				+0.1
118,585	+				-0.9
118,585	+				+0.3
118,585	+				+3.3
118,585	+				-0.1
118,585	+				+0.8
118,585	+				+1.7
118,586	-				+0.3
118,586	-				-0.4
118,586	-				-1.2
118,586	-				-0.6
118,586	-				-0.2
118,586	-				+0.4
118,586	-				-0.2
118,586	-				-0.3
118,586	-				-0.5
118,738	+				-0.1
118,738	+				-1.1
118,738	+				-1.9
118,738	+				-0.1
118,738	+				-1.4
118,738	+				-0.9
118,739	-				+0.4
118,739	-				+1.2
118,739	-				-0.2
118,739	-				-0.3
118,739	-				+0.4
118,739	-				-0.7
118,757	+				-0.1
118,757	+				-0.9
118,870	+				+0.4
118,870	+				-0.5
118,870	+				-0.1
118,870	+				+0.2
118,870	+				+0.3
118,870	+				+0.1
118,870	+				-0.4
118,870	+				+0.5
118,870	+				-1.2
118,870	+				-0.5
118,870	+				-0.6
118,870	+				-0.1
118,870	+				+0.1
118,870	+				-0.4
118,870	+				+0.5
118,870	+				-0.8
118,870	+				+0.3
118,870	+				-1.1
118,870	+				-0.2
118,870	+				+0.2
118,870	+				-1.0
118,870	+				-0.3
118,870	+				-0.2
118,871	-				+0.5
118,871	-				-2.1
118,871	-				-0.1
118,871	-				-1.2
118,871	-				+0.1
118,871	-				-0.3
118,871	-				+0.3
118,871	-				-0.3
118,871	-				-0.4
118,871	-				-0.3
118,871	-				+0.0
118,871	-				+1.0
118,871	-				-0.5
118,871	-				-0.2
118,871	-				+1.3
118,871	-				-0.4
118,871	-				+0.5
118,871	-				+0.7
118,871	-				-0.2
118,871	-				+0.1
118,871	-				-0.3
118,871	-				+2.7
118,871	-				-0.4
118,871	-				-0.6
118,871	-				-1.9
118,871	-				-0.3
118,871	-				-0.3
119,083	+		GFF6326	0.19	-2.9
119,083	+		GFF6326	0.19	-0.7
119,083	+		GFF6326	0.19	-2.7
119,152	+		GFF6326	0.24	-0.1
119,152	+		GFF6326	0.24	-0.3
119,152	+		GFF6326	0.24	-1.5
119,152	+		GFF6326	0.24	+0.2
119,152	+		GFF6326	0.24	+0.1
119,152	+		GFF6326	0.24	+0.6
119,152	+		GFF6326	0.24	-0.1
119,152	+		GFF6326	0.24	+0.9
119,152	+		GFF6326	0.24	-0.4
119,153	-		GFF6326	0.25	-0.7
119,153	-		GFF6326	0.25	+0.9
119,153	-		GFF6326	0.25	-2.7
119,153	-		GFF6326	0.25	-0.5
119,153	-		GFF6326	0.25	-0.2
119,153	-		GFF6326	0.25	-0.1
119,153	-		GFF6326	0.25	+0.2
119,153	-		GFF6326	0.25	-0.4
119,153	-		GFF6326	0.25	-0.2
119,153	-		GFF6326	0.25	-0.1
119,153	-		GFF6326	0.25	+0.2
119,356	+		GFF6326	0.40	-0.2
119,356	+		GFF6326	0.40	+0.4
119,356	+		GFF6326	0.40	-1.4
119,356	+		GFF6326	0.40	-0.7
119,356	+		GFF6326	0.40	-0.0
119,356	+		GFF6326	0.40	+1.5
119,356	+		GFF6326	0.40	+4.0
119,356	+		GFF6326	0.40	+0.8
119,356	+		GFF6326	0.40	-0.4
119,356	+		GFF6326	0.40	-0.7
119,356	+		GFF6326	0.40	-1.5
119,356	+		GFF6326	0.40	-0.8
119,356	+		GFF6326	0.40	-1.5
119,356	+		GFF6326	0.40	-0.8
119,356	+		GFF6326	0.40	-0.9
119,356	+		GFF6326	0.40	-0.3
119,356	+		GFF6326	0.40	+0.0
119,356	+		GFF6326	0.40	-1.5
119,356	+		GFF6326	0.40	-0.1
119,357	-		GFF6326	0.40	-0.7
119,357	-		GFF6326	0.40	-1.0
119,357	-		GFF6326	0.40	+1.2
119,357	-		GFF6326	0.40	-0.1
119,357	-		GFF6326	0.40	-0.5
119,357	-		GFF6326	0.40	-0.4
119,357	-		GFF6326	0.40	-0.3
119,357	-		GFF6326	0.40	-0.5
119,357	-		GFF6326	0.40	-0.3
119,357	-		GFF6326	0.40	-0.1
119,357	-		GFF6326	0.40	+0.4
119,357	-		GFF6326	0.40	-1.5
119,357	-		GFF6326	0.40	-0.7
119,422	+		GFF6326	0.45	-0.2
119,422	+		GFF6326	0.45	+0.5
119,422	+		GFF6326	0.45	-0.7
119,422	+		GFF6326	0.45	+0.2
119,422	+		GFF6326	0.45	-0.3
119,422	+		GFF6326	0.45	+1.7
119,422	+		GFF6326	0.45	+0.4
119,422	+		GFF6326	0.45	-0.5
119,422	+		GFF6326	0.45	+0.9
119,422	+		GFF6326	0.45	-0.1
119,422	+		GFF6326	0.45	-0.2
119,422	+		GFF6326	0.45	+0.5
119,422	+		GFF6326	0.45	-0.5
119,422	+		GFF6326	0.45	-0.6
119,422	+		GFF6326	0.45	+0.7
119,422	+		GFF6326	0.45	+0.5
119,422	+		GFF6326	0.45	-0.1
119,422	+		GFF6326	0.45	-1.0
119,422	+		GFF6326	0.45	-1.1
119,422	+		GFF6326	0.45	+0.3
119,422	+		GFF6326	0.45	-0.2
119,422	+		GFF6326	0.45	-0.1
119,423	+		GFF6326	0.45	-0.6
119,423	-		GFF6326	0.45	-0.3
119,423	-		GFF6326	0.45	-1.7
119,423	-		GFF6326	0.45	+0.1
119,423	-		GFF6326	0.45	-0.1
119,423	-		GFF6326	0.45	-1.3
119,423	-		GFF6326	0.45	+0.0
119,423	-		GFF6326	0.45	+0.4
119,423	-		GFF6326	0.45	-0.2
119,423	-		GFF6326	0.45	+0.3
119,423	-		GFF6326	0.45	-0.4
119,423	-		GFF6326	0.45	-0.4
119,423	-		GFF6326	0.45	+0.5
119,423	-		GFF6326	0.45	+0.1
119,423	-		GFF6326	0.45	+1.5
119,423	-		GFF6326	0.45	-0.4
119,423	-		GFF6326	0.45	-1.9
119,423	-		GFF6326	0.45	+0.0
119,423	-		GFF6326	0.45	+0.5
119,423	-		GFF6326	0.45	-0.8
119,423	-		GFF6326	0.45	-1.1
119,749	+		GFF6326	0.71	-0.7
119,749	+		GFF6326	0.71	+0.7
119,749	+		GFF6326	0.71	-1.7
119,749	+		GFF6326	0.71	+1.7
119,749	+		GFF6326	0.71	-1.0
119,749	+		GFF6326	0.71	-0.1
119,749	+		GFF6326	0.71	-0.5
119,749	+		GFF6326	0.71	-0.9
119,750	-		GFF6326	0.71	+0.2
119,750	-		GFF6326	0.71	-0.5
119,750	-		GFF6326	0.71	+0.0
119,750	-		GFF6326	0.71	-0.5
119,750	-		GFF6326	0.71	-1.1
119,750	-		GFF6326	0.71	-1.6
119,750	-		GFF6326	0.71	-0.4